Locus 4589

Sequence ID X_DroMel_CAF1
Location 12,025,060 – 12,025,150
Length 90
Max. P 0.809558
window7550

overview

Window 0

Location 12,025,060 – 12,025,150
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 91.55
Mean single sequence MFE -22.00
Consensus MFE -17.30
Energy contribution -17.38
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -1.77
Structure conservation index 0.79
SVM decision value 0.64
SVM RNA-class probability 0.809558
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12025060 90 - 22224390
AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAAUACGUCGA--GUACGAAGGCAACAACAUUCACAUUC
.((((((((((((((......)))).(....)..))))))).......(((((...(((.....--)))...)))))........))).... ( -19.00)
>DroSec_CAF1 57376 92 - 1
AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGACUGUACGAAAGCAACAACAUUCACAUUC
.((((((((((((((......)))).(....)..))))))).......(((((..(((((.....)))))..)))))........))).... ( -23.40)
>DroSim_CAF1 55976 92 - 1
AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGAGUGUACGAAAGCAGCAACAUUCACAUUC
.((((((((((((((......)))).(....)..)))))))...(((.(((((..(((((.....)))))..)))))))).....))).... ( -27.30)
>DroEre_CAF1 53736 82 - 1
AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGA--GUACGAAAGCAACAACA---G-----
....(((((((((((......)))).(....)..))))))).......(((((..((((.....--))))..)))))......---.----- ( -20.90)
>DroYak_CAF1 57018 87 - 1
AGUGGAAAGUGGGGCAUUAAAGCAUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGA--GUACGAAAGCAACAACA---ACAUCU
.(((((((((.(((..(((.....)))..))).)).))))))).....(((((..((((.....--))))..)))))......---...... ( -19.40)
>consensus
AGUGGAAAGUGGGGCAUUAAAGCCUAGAAUCCGACAUUUUCAUAUGCAUGCUUAAGUACGUCGA__GUACGAAAGCAACAACAUUCACAUUC
.((.(((((((((((......)))).(....)..))))))).......(((((..((((.......))))..)))))))............. (-17.30 = -17.38 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:55 2006