Locus 4583

Sequence ID X_DroMel_CAF1
Location 12,017,475 – 12,017,595
Length 120
Max. P 0.914996
window7538

overview

Window 8

Location 12,017,475 – 12,017,595
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.50
Mean single sequence MFE -29.84
Consensus MFE -27.08
Energy contribution -26.88
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.45
Structure conservation index 0.91
SVM decision value 1.10
SVM RNA-class probability 0.914996
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12017475 120 - 22224390
GUCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUACACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACAUAGCUACCGUAUGGAUUUAAUUGCUUAC
((((.((.((((((((..(((...((((((....))))))...))).))))))))(((((((..((........))..)))))))...............))..))))............ ( -29.90)
>DroSec_CAF1 50932 120 - 1
GUCCCGCAUCGGAUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUACACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACACAGCUACCGUUUGGAUUUAAUUGCUUAC
((((.....(((.((((((((((.((((((....)))))).................(((((..((........))..)))))))))))).)))....)))...))))............ ( -28.60)
>DroSim_CAF1 50125 120 - 1
GUCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUACACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACACGGCUACCGUAUGGAUUUAAUUGCUUAC
.(((...(((((((((..(((...((((((....))))))...))).))))))))).(((((..((........))..)))))))).....((((...)))).................. ( -31.50)
>DroEre_CAF1 48035 120 - 1
GCCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUAUACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACACGACUACCGUAUGGAUUCAAUUGCUUGC
.....(((((((((((..(((...((((((....))))))...))).)))))))).((((((..((........))..))))))((((...(((.....)))....))))...))).... ( -29.70)
>DroYak_CAF1 49121 120 - 1
ACCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUAUACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGAUGGAAUAACACGGCUACCGUAUGCAUUUAAUUGCUUAC
.....((((((((((((.(((((.((((((....)))))).................(((((..((........))..))))))))))))))).....))).)))).............. ( -29.50)
>consensus
GUCCCGCAUCGGGUGUUUGUUCCAAUAAUGUUUUUAUUAUACCAACUACACUCGAUUGUCAGUGGUGAAUGUUAAUUGCUGACGGAAUAACACGGCUACCGUAUGGAUUUAAUUGCUUAC
.....(((((((((((..(((...((((((....))))))...))).))))))))(((((((..((........))..)))))))............................))).... (-27.08 = -26.88 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:44 2006