Locus 4578

Sequence ID X_DroMel_CAF1
Location 12,012,408 – 12,012,515
Length 107
Max. P 0.849409
window7530

overview

Window 0

Location 12,012,408 – 12,012,515
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 79.55
Mean single sequence MFE -27.60
Consensus MFE -25.92
Energy contribution -24.93
Covariance contribution -0.99
Combinations/Pair 1.21
Mean z-score -0.35
Structure conservation index 0.94
SVM decision value 0.78
SVM RNA-class probability 0.849409
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12012408 107 + 22224390
CCUCUACAUCAACGUCCUCGAAGUCAUCCCACUCUAGAUCCGAAUCGAUGGCUUUGACCGCACUCAGCAAUAGCAAACUGCUGGCGAAGAGCAUCGACAGUGUUGCG
......((.((..(((.(((((((((((....((.......))...)))))))))))..((.((..((..((((.....))))))..)).))...)))..)).)).. ( -25.70)
>DroSec_CAF1 45919 94 + 1
-------------AUCCUCAAAGUCGUCAUAUUCCGGGCUCGAAUCGGUGACUUUGACCGCACUCAGCAACAGCAAACUGCUGGCGAGGAGCAUUGACAGCGUUGCG
-------------.(((((...((.((((....((((.......))))......)))).)).....((..((((.....)))))))))))(((.((....)).))). ( -26.70)
>DroSim_CAF1 45124 94 + 1
-------------AUCCUCGAAGUCGUCCCAUUCCCGGCCCGAAUCGGUGACUUUGAACGCACUCAGCAACAGCAAACUGCUGGCGAGGAGCAUCGACAGCGUUGCG
-------------.((((((((((((.((.((((.......)))).))))))))))).(((...(((((.........)))))))).)))(((.((....)).))). ( -30.40)
>consensus
_____________AUCCUCGAAGUCGUCCCAUUCCAGGCCCGAAUCGGUGACUUUGACCGCACUCAGCAACAGCAAACUGCUGGCGAGGAGCAUCGACAGCGUUGCG
.................(((((((((((..((((.......)))).)))))))))))..((.....))....((((...((((.(((......))).)))).)))). (-25.92 = -24.93 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:38 2006