Locus 4572

Sequence ID X_DroMel_CAF1
Location 11,996,779 – 11,996,898
Length 119
Max. P 0.817009
window7517

overview

Window 7

Location 11,996,779 – 11,996,898
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.98
Mean single sequence MFE -29.64
Consensus MFE -26.94
Energy contribution -27.06
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.33
Structure conservation index 0.91
SVM decision value 0.67
SVM RNA-class probability 0.817009
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11996779 119 + 22224390
GGUUUUGGGAUAAAUGCAGAGACAAGUACAA-AAGCCGAAUGAGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACG
.(((((.((((..(((((..(.(((((....-..(((.....(((((..(....)..).)))).)))((......)))))))).)))))...))))(((....))).)))))........ ( -28.00)
>DroSec_CAF1 35729 119 + 1
GGUUUUGGGUUAAAUGCAGAGACAAGUACAA-AAGCCGAAUGAGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACA
.((((((((((..(((((..(.(((((....-..(((.....(((((..(....)..).)))).)))((......)))))))).)))))..)))))).)))).(((....)))....... ( -30.40)
>DroSim_CAF1 37168 119 + 1
GGUUUCGGGUUAAAUGCAGAGACAAGUACAA-AAGCCGAAUGAGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACA
.((((((((((..(((((..(.(((((....-..(((.....(((((..(....)..).)))).)))((......)))))))).)))))..)))))(((....))).)))))........ ( -32.90)
>DroEre_CAF1 34601 119 + 1
GGUUUUGGGUUAAAUGCAGAGACAAGUACAA-AAGCCGAAUGGGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACA
.((((((((((..(((((..(.(((((....-..(((.....)))...((((..((.....))..))))........)))))).)))))..)))))).)))).(((....)))....... ( -30.90)
>DroYak_CAF1 35728 120 + 1
GGUUUUGGGUUAAAUGCAGAGACAAGUACAAAAAGCCGAAUGAGCAGGAUGCAAUUACAUACUAGUCGUAAUAGGACACUUGCAUGUAUGGAAUCCGCAAACAUGCAGGAGCUACAAAGA
((((((..((....((......))...))..))))))...(((((((.(((......))).)).(((.......))).(((((((((.((.......)).))))))))).))).)).... ( -26.00)
>consensus
GGUUUUGGGUUAAAUGCAGAGACAAGUACAA_AAGCCGAAUGAGCAGGAUGCAAGGACAUGCUAGGCGUAAUAGGACACUUGCAUGCAUGGAAUCCGCAAACAUGCAGGAGCAACAAACA
.((((((((((..(((((..(.(((((.......(((.....((((.............)))).)))((......)))))))).)))))..)))))(((....))).)))))........ (-26.94 = -27.06 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:27 2006