| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,993,440 – 11,993,556 |
| Length | 116 |
| Max. P | 0.698501 |
| Location | 11,993,440 – 11,993,556 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.83 |
| Mean single sequence MFE | -29.24 |
| Consensus MFE | -19.64 |
| Energy contribution | -21.33 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11993440 116 - 22224390 UUUAGCACACUUUUCCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGUCAGCC----C .(((((..........(((((.....)))))........)))))....((((((((...(..(((((..(.(((((((........))))))).)..)))))..)..))))))))----. ( -31.97) >DroSec_CAF1 32583 116 - 1 UUUAGCAUACUUUUCCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGUCAGCC----C .(((((..........(((((.....)))))........)))))....((((((((...(..(((((..(.(((((((........))))))).)..)))))..)..))))))))----. ( -31.97) >DroSim_CAF1 33846 116 - 1 UUUUGCAUACUUUUCCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGUCAGCC----C ................(((((.....))))).................((((((((...(..(((((..(.(((((((........))))))).)..)))))..)..))))))))----. ( -31.90) >DroEre_CAF1 31435 120 - 1 UAUAGCAUACUUUUGCGCUGGAUUACACAGCUUGACCCAGUUGAUCCGGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGCCCCCCCCCCC ....(((......)))(((((...((((.((.......(((((((.....(((....)))....)))))))(((((((........))))))).))..))))..))).)).......... ( -31.30) >DroYak_CAF1 32561 114 - 1 UUUAGCAUACUUUUUCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUCGCCU------U ....((..........(((((.....)))))..(((.((((((((.....(((....)))....)))))))(((((((........))))))).....).)))......))..------. ( -29.80) >DroPer_CAF1 135126 93 - 1 -----------------------UAACGCCUUUGACCCAGUUGAUC-UGCCUUGUAACAGAAAUAUUAACUUAAGCGAUUUAAUCCUUGGGCAUGCGAGCAUCUCGUUCCCACC---GGU -----------------------....(((.(((....((((((((-((........))))....))))))....))).........((((...(((((...))))).))))..---))) ( -18.50) >consensus UUUAGCAUACUUUUCCGCUGGAUUACCCAGCUUGACCCAGUUGAUCCUGGCUGGCAACAGAAAUAUUAACUUGAGCAAUUUAAUCCUUGCUCAUGCGAGUGUCCCCAUGUCAGCC____C ................(((((.....)))))..(((.((((((((.....(((....)))....)))))))(((((((........))))))).....).)))................. (-19.64 = -21.33 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:19 2006