| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,917,828 – 11,917,930 |
| Length | 102 |
| Max. P | 0.999747 |
| Location | 11,917,828 – 11,917,930 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 61.11 |
| Mean single sequence MFE | -21.54 |
| Consensus MFE | -12.85 |
| Energy contribution | -12.97 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.60 |
| SVM decision value | 3.99 |
| SVM RNA-class probability | 0.999747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11917828 102 + 22224390 UUUCUCCGCCCU--GCCAAUCCAC--CGUCCCCCC--CCCUUACCCCUUCCA--CUA---------ACUCUUUUCAGGCUGCUCUUUUUGGCCAGCAA-AUUCGUCUGGCUAAAAGGCAC .......(((..--(((.......--.........--...............--...---------..........)))......(((((((((((..-....).))))))))))))).. ( -19.30) >DroYak_CAF1 29293 108 + 1 UUUCUCCGUCGUUCGCCGACCUGCGUAG-CACCGC--CCCCUUCCCCUCCCAUUCCA---------ACUCUUUUCGAGCUGCUCUUUUUGGCCAGCAAAAUUCGUCUGGCUGGGAGGCAC .......((((.....))))..(((...-...)))--........((((((....((---------.(((.....))).))........(((((((.......).))))))))))))... ( -28.50) >DroAna_CAF1 51116 111 + 1 UCUCUCUCUAUC--UCC-UUUAGC--CGCCCACCCUUUCCUUAGCCUUUCUU--UUUGCAUGUGCCUCCCCCCUUAACUUGCUCUUUUUGGCCAGGA--AUUCGUCUGGCUCAAAUGCAC ............--...-...(((--((..(.....(((((..(((......--...(((.((.............)).))).......))).))))--)...)..)))))......... ( -16.81) >consensus UUUCUCCGUCCU__GCC_AUCAGC__CG_CCCCCC__CCCUUACCCCUUCCA__CUA_________ACUCUUUUCAAGCUGCUCUUUUUGGCCAGCAA_AUUCGUCUGGCUAAAAGGCAC ...............................................................................((((..((((((((((..........)))))))))))))). (-12.85 = -12.97 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:09 2006