Locus 4511

Sequence ID X_DroMel_CAF1
Location 11,909,795 – 11,909,896
Length 101
Max. P 0.986784
window7419

overview

Window 9

Location 11,909,795 – 11,909,896
Length 101
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 94.47
Mean single sequence MFE -31.71
Consensus MFE -30.25
Energy contribution -30.31
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.95
SVM decision value 2.05
SVM RNA-class probability 0.986784
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11909795 101 + 22224390
----GACUGUGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA----
----..(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....)))))).---- ( -31.91)
>DroSec_CAF1 20228 101 + 1
----GACUGUGGCAACGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA----
----..(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....)))))).---- ( -31.91)
>DroSim_CAF1 17734 101 + 1
----GACUGUGGCAACGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA----
----..(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....)))))).---- ( -31.91)
>DroEre_CAF1 18165 101 + 1
----GGCUGUGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAGAGGACAGA----
----((((.((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..))))))))...........---- ( -30.61)
>DroYak_CAF1 20948 101 + 1
----GACUGUGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA----
----..(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....)))))).---- ( -31.91)
>DroAna_CAF1 40251 109 + 1
GGCGGGUGGCGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACGAAGGAC
(((((((((((......))))))).)))).....(((((((((.............)))))((((....)).))..))))..(((...((..((....)).))...))) ( -32.02)
>consensus
____GACUGUGGCAUCGCGUCAUCUUGUCAAAUAUUUCGCGCUAAAUUAACACGACAGCGCGCCCAAAUGGAGUAAGAAGAUGUCAGCCGGGCCGAAAGGACAGA____
......(((((((...(((((.(((((((........((((((.............))))))........)).))))).)))))..)))...((....))))))..... (-30.25 = -30.31 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:56 2006