Locus 450

Sequence ID X_DroMel_CAF1
Location 1,333,421 – 1,333,540
Length 119
Max. P 0.671925
window690

overview

Window 0

Location 1,333,421 – 1,333,540
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 92.16
Mean single sequence MFE -54.93
Consensus MFE -49.24
Energy contribution -49.47
Covariance contribution 0.23
Combinations/Pair 1.05
Mean z-score -1.84
Structure conservation index 0.90
SVM decision value 0.29
SVM RNA-class probability 0.671925
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1333421 119 - 22224390
AGCUGGCGCAAGCUUUGGCUGAAAGCUGAGCCUCGGAAAAGGGACUGCCUGUUGGCGGCCAACGAGCCCUGUAGUCUGUGCUGGGCAGCGCAUGGCAACAGGUCGGGCAGCGCACCGCC
.((.(((((.((((((.....))))))..(((.(((.....((.(((((....))))))).......(((((.(((((((((....)))))).))).))))))))))).)))).).)). ( -53.00)
>DroSec_CAF1 9499 119 - 1
AGCUGGCGCAAGCUUUGGCUGAAAGCUGCGCCUCGGCAAAGGGACCGCCAGUUGACGGCCAACGAGCCCUGUAGUCUGUGCUGGGCAGCGCAUGGCAACAGGUCAGGCAGCGCACCGCC
.((.(((((..((((((((((..(((((((.(((......)))..)).)))))..))))))..))))(((((.(((((((((....)))))).))).))))).......)))).).)). ( -51.60)
>DroYak_CAF1 8937 119 - 1
AGCUGGCACAAGCUUUGGCUGAAAGCUGUGCCUAGGUCGAAGGACCGCCAGUUGGCGGCCAAGGAGUCCUGUAGUCUGUGCUGGGCAGCGCAUGGCAACAGGUCGGGCAGCGCACCGCC
.((((.(.....(((((((((..(((((.((...((((....)))))))))))..))))))))).(.(((((.(((((((((....)))))).))).))))).).).))))........ ( -60.20)
>consensus
AGCUGGCGCAAGCUUUGGCUGAAAGCUGAGCCUCGGAAAAGGGACCGCCAGUUGGCGGCCAACGAGCCCUGUAGUCUGUGCUGGGCAGCGCAUGGCAACAGGUCGGGCAGCGCACCGCC
.((.(((((.((((((.....))))))..((((........((.(((((....))))))).....(.(((((.(((((((((....)))))).))).))))).))))).)))).).)). (-49.24 = -49.47 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:50 2006