Locus 449

Sequence ID X_DroMel_CAF1
Location 1,332,162 – 1,332,266
Length 104
Max. P 0.691100
window689

overview

Window 9

Location 1,332,162 – 1,332,266
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 70.76
Mean single sequence MFE -27.18
Consensus MFE -15.51
Energy contribution -16.07
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.57
SVM decision value 0.33
SVM RNA-class probability 0.691100
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1332162 104 - 22224390
CGGGGCAGGGGCGGGGUUAGCCUUCCUAUGCUCCAGCCACUUUCCACUUUUCUACUGCCCCUUGUCAUCUCUCUCUGUUCUGCCGAGCGACAUACCGUUGGGCG
.(((((((.(((((((((((.....))).))))).)))................)))))))....................(((.((((......)))).))). ( -36.13)
>DroSec_CAF1 8271 93 - 1
CGGGGCAGGGGC------AGCCUUCCUGUGCUCCAGCCACUUUCCACUUUUCCACUGCCCCUUAUCAUCUCUCUCUGUUC-----AGCGACAUUCCGGUGGGCG
.(((((((((((------((.....))))((....))..............)).)))))))...............((((-----(.((......)).))))). ( -29.10)
>DroYak_CAF1 7729 80 - 1
CGGGGCAAGGGC------AUUCCUCCAGUGCUUCUGCCACUUUCUACUU-UCCACUACCCCUUAUCAUCUCGCUU--CUC-----UGCUGC----------ACG
...((((..(((------(((.....))))))..))))...........-.....................((..--...-----.))...----------... ( -16.30)
>consensus
CGGGGCAGGGGC______AGCCUUCCUGUGCUCCAGCCACUUUCCACUUUUCCACUGCCCCUUAUCAUCUCUCUCUGUUC_____AGCGACAU_CCG_UGGGCG
.(((((((((((.......))))......((....)).................)))))))........................................... (-15.51 = -16.07 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:49 2006