| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,875,305 – 11,875,405 |
| Length | 100 |
| Max. P | 0.967774 |
| Location | 11,875,305 – 11,875,405 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 84.72 |
| Mean single sequence MFE | -22.41 |
| Consensus MFE | -20.69 |
| Energy contribution | -20.47 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.967774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11875305 100 - 22224390 AAUUUGCAGUGAUCCCACUGCAGCCAAAUGUCUGAUUACCGCACACCAUCACCACCCCACCCGGCAGGAAACUUUUGGCAAACUCCGAAAUCGUGGCCAG ....(((((((....)))))))((((....((((((...........)))).........((((.((....)).))))........)).....))))... ( -22.70) >DroSec_CAF1 8563 88 - 1 AAUUUGCAGUGAUCCCACUGCAGCCAGAUCUCUGAUUCCCGCUC--------CACCCCCC----CUGGAAACUUUUGGCAAACUCCAAAAUCUUGGCCAG ....(((((((....)))))))(((((((.............((--------((......----.))))....(((((......)))))))).))))... ( -22.60) >DroSim_CAF1 8543 86 - 1 AAUUUGCAGUGAUCCCACUGCAGCCAGAUGUCUGAUUCCCGCUC--------C--CCCCC----CUGGAAACUUUUGGCAAACUCCAAAAUCUUGGCCAG ....(((((((....)))))))(((((((......((((.....--------.--.....----..))))...(((((......)))))))).))))... ( -21.92) >consensus AAUUUGCAGUGAUCCCACUGCAGCCAGAUGUCUGAUUCCCGCUC________CACCCCCC____CUGGAAACUUUUGGCAAACUCCAAAAUCUUGGCCAG ....(((((((....)))))))((((........................................(....)((((((......))))))...))))... (-20.69 = -20.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:20 2006