Locus 4486

Sequence ID X_DroMel_CAF1
Location 11,873,582 – 11,873,677
Length 95
Max. P 0.599042
window7373

overview

Window 3

Location 11,873,582 – 11,873,677
Length 95
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 75.12
Mean single sequence MFE -17.75
Consensus MFE -1.19
Energy contribution -1.19
Covariance contribution -0.00
Combinations/Pair 1.33
Mean z-score -1.35
Structure conservation index 0.07
SVM decision value 0.13
SVM RNA-class probability 0.599042
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11873582 95 - 22224390
UAAAUUUUCU-GGCA------AUAGCAUAAAUACAUUA---CGUG--CCAUAAU----UCAUCAUCGAAUUUUCGCAAUGCCUUGUUGAAU-----CAUU-UUCGCAACGGAACUUU
......((((-((((------...((.(((.....)))---.))(--(...(((----((......)))))...))..))))((((.(((.-----....-))))))).)))).... ( -12.80)
>DroSec_CAF1 6738 98 - 1
UAAAUUUUCCAGGCG------AUAGCAUAAAUACAUUA---CGUGCGCCAUAAU----UCAUCAUCGAAUUUUCGCAUUGCCUUGUUCAAU-----AAUU-UUCGCAACGGAACUUU
......((((..(((------(..........(((...---.(((((....(((----((......)))))..))))).....))).....-----....-.))))...)))).... ( -18.95)
>DroSim_CAF1 6696 102 - 1
UAAAUUUUCCAGGCAUAA---AUAGCAUAAAUACAUCA---CGUGCGCCAUAAU----UCAUCAUCGAAUUUUCGCAUUGCCUUGUUCAAU-----AAUUUUUCGCAACGGAACUUU
......(((((((((...---...((((..........---.))))((...(((----((......)))))...))..)))))(((..((.-----....))..)))..)))).... ( -16.70)
>DroEre_CAF1 8583 96 - 1
UCAAUUU-CU-GACU-AAAACAU-----GAAUACAUUAUUUCAUG--UAAUGAU----UCAUCAUCGAAUUUUGC-AGUGCUUCGUUGAAU-----AAUU-UUCGCAACGGAACUUU
.......-((-(...-...((((-----(((........))))))--)...(((----((......)))))...)-))...(((((((...-----....-....)))))))..... ( -15.50)
>DroYak_CAF1 6893 108 - 1
UAAAUUU-CU-GCCU-AAAAUAUACUAUAAUUACAUUA---CGUG--UAAUAACUCACUCAUCAUCGAAUUUGGCGAAUGCCUCGUUGAAUUCGCGACAU-UUUGCAGCGGAACUUU
.....((-((-((..-.............(((((((..---.)))--))))...............(((((..((((.....))))..)))))((((...-.)))).)))))).... ( -24.80)
>consensus
UAAAUUUUCU_GGCA_AA___AUAGCAUAAAUACAUUA___CGUG__CCAUAAU____UCAUCAUCGAAUUUUCGCAAUGCCUUGUUGAAU_____AAUU_UUCGCAACGGAACUUU
..................................................................................((((((.................))))))...... ( -1.19 =  -1.19 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:16 2006