Locus 4481

Sequence ID X_DroMel_CAF1
Location 11,862,371 – 11,862,469
Length 98
Max. P 0.623967
window7367

overview

Window 7

Location 11,862,371 – 11,862,469
Length 98
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 84.69
Mean single sequence MFE -21.51
Consensus MFE -16.30
Energy contribution -16.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.76
SVM decision value 0.19
SVM RNA-class probability 0.623967
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11862371 98 + 22224390
---GACCGCUCGCUCUCCGAUUUUGCCGUAUU--GGAAUACAACAAACAAAAAAAAAAAACAACAAAAAAAUAAGAAGAGUGGGUGGCGCUUUGCGGAGGAUA
---..((((((((((((((((........)))--)))..........................(..........)..))))))))))(((...)))....... ( -20.20)
>DroSec_CAF1 12807 87 + 1
CGCGACCGCUCGCUCUCCGAUUUUGCCCUAUUGUGGAAUACAACAAA------AAA--AACAACAA-AAAAUAAGAAGAGUGGGUGG-------CGGAGGAUA
..((.((((((((((((..(((((......((((.............------...--.))))...-)))))..).)))))))))))-------))....... ( -21.63)
>DroSim_CAF1 12764 88 + 1
C--GACCGCUCGCUCUCCGAUUUUGCCGUAUUGUGGAAUACAACAAA------AAAACAACAACAAAAAAAUAAGAAGAGUGGGUGG-------CGGAGGAUA
(--(.((((((((((((..(((((...((.((((.............------...))))..))...)))))..).)))))))))))-------))....... ( -22.69)
>consensus
C__GACCGCUCGCUCUCCGAUUUUGCCGUAUUGUGGAAUACAACAAA______AAAA_AACAACAAAAAAAUAAGAAGAGUGGGUGG_______CGGAGGAUA
.....((((((((((((..(((((...........................................)))))..).)))))))))))................ (-16.30 = -16.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:10 2006