Locus 447

Sequence ID X_DroMel_CAF1
Location 1,318,157 – 1,318,277
Length 120
Max. P 0.690904
window687

overview

Window 7

Location 1,318,157 – 1,318,277
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.50
Mean single sequence MFE -47.36
Consensus MFE -37.46
Energy contribution -39.18
Covariance contribution 1.72
Combinations/Pair 1.16
Mean z-score -1.62
Structure conservation index 0.79
SVM decision value 0.33
SVM RNA-class probability 0.690904
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1318157 120 - 22224390
UGUGGCGGUGAGAUGGAACCGUUGGCUCUCAAACAGGGUCUGGAGAAUAGGAGUAGGCGUACCGCUUCCCACGAAGAAGCUGUGGGCAGUGGUGAUGCCGAGGAGCAGUACAUCCAUGAG
...((((((........))))))((((((.....))))))((((......(..(.(((((((((((.((((((.......)))))).)))))).)))))...)..)......)))).... ( -42.90)
>DroSec_CAF1 54319 120 - 1
UGUGGCGGUGAGACGGAACCGCUGGCCCUCAAACAGGGUCUGCAGAAGAGGAGUAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAUGCCGAGGAGCAGUACAUCCACGAG
.((((((((........)))))..((((((........(((.....)))......((((((((((((((((.(.(....)).))))))))))).))))))))).))........)))... ( -52.50)
>DroSim_CAF1 42291 120 - 1
UGUGGCGGUGAGACGGAACCGCUGGCCCUCAAACAGGGUGUGCAGAAGAGGAGUAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAUGCCGAGGAGCAGUAUAUCCACGAG
.((((((((........)))))..((((((..........(((.........)))((((((((((((((((.(.(....)).))))))))))).))))))))).))........)))... ( -50.80)
>DroEre_CAF1 52505 120 - 1
UGUGGCGGUGAGACGGAACCGCUGGCUCUAACACAGGGUCAGGAAAAGAGGAGCAGGCGAACGGCUGCCCAGGAGAAAGCUGUGGGCAGUAGGGAUUCCGAGGAGCAGUACAUCCACGAG
.((((..(((...(((((((.((((((((.....))))))))...................(.((((((((.(.......).)))))))).))).)))))........)))..))))... ( -39.00)
>DroYak_CAF1 46291 120 - 1
AGUGGCGGUGCGACGGAGCCGCUGGCUCUGAAACAGGGCCUGGAGCAGCGGAGCAGACGAACGGCUGCCCGGGAGGACGCUGUGGGCCAUGGGGAUCCCGAGGAGCAGUACAUCCACGAG
.((((..((((..(((((((...)))))))...((.(((((...((((((..((((.(....).))))((....)).))))))))))).))((....))........))))..))))... ( -51.60)
>consensus
UGUGGCGGUGAGACGGAACCGCUGGCUCUCAAACAGGGUCUGGAGAAGAGGAGUAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAUGCCGAGGAGCAGUACAUCCACGAG
...((((((........))))))((((((.....))))))...............((((((((((((((((.(.......).))))))))))).)))))..(((........)))..... (-37.46 = -39.18 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:47 2006