Locus 4459

Sequence ID X_DroMel_CAF1
Location 11,798,226 – 11,798,332
Length 106
Max. P 0.573480
window7326

overview

Window 6

Location 11,798,226 – 11,798,332
Length 106
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 87.63
Mean single sequence MFE -30.85
Consensus MFE -21.36
Energy contribution -22.24
Covariance contribution 0.88
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.69
SVM decision value 0.08
SVM RNA-class probability 0.573480
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11798226 106 + 22224390
UCAUUCGUAAUCGAGAUCG--------AUCAAUUUCGC----GAUCGAUGUGGAAUGCAUUUGUCGUUUUCGUACACGGAUGUGUGUGUGGAUGGACAUUCAGGUGCAGUUGUUAUUG
..........((.(.((((--------(((........----))))))).).)).((((((((..(((((((((((((....))))))))))..)))...)))))))).......... ( -29.50)
>DroSec_CAF1 2053 103 + 1
UCAUUCGGAAUCGAGUUCG--------AUCGAUUUCGA----GAUCGAUGUGGAAUGCAUUUGUCGUUUU-GUACACGGAUGUG--UGUGGAUGGACAUUCAGGUGCAGUUGUUUUUG
....((((((((((.....--------.))))))))))----(((.(((((.....))))).)))...((-((((..((((((.--(......).))))))..))))))......... ( -31.10)
>DroSim_CAF1 2908 103 + 1
UCAUUCGGAAUCGAGUUCG--------AUCGAUUUCGA----GAUCGAUGUGGAAUGCAUUUGUCGUUUU-GUACACGGAUGUG--UGUGGAUGGACAUUCAGGUGCAGUUGUUAUUG
...(((((((((((.....--------.))))))))))----)..(((((.....((((((((((..((.-.(((((....)))--))..))..))))....)))))).....))))) ( -33.20)
>DroEre_CAF1 2035 112 + 1
UCAUUCGGAAUCGGGAUCGGGAUCGGAAUCGAAAUCGAAAUCGAUCGAUGUGGAAUGCGUUUGUCGUUUU-GUACACGGAUGUG--UGUGGAUGGACAUUCAGGUGCAGU---UAUUG
.(((((.(.(((..((((((..((((........))))..))))))))).).))))).(..((((..((.-.(((((....)))--))..))..))))..).........---..... ( -29.60)
>consensus
UCAUUCGGAAUCGAGAUCG________AUCGAUUUCGA____GAUCGAUGUGGAAUGCAUUUGUCGUUUU_GUACACGGAUGUG__UGUGGAUGGACAUUCAGGUGCAGUUGUUAUUG
....((((((((((..............))))))))))....(((.(((((.....))))).)))......((((..((((((............))))))..))))........... (-21.36 = -22.24 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:33 2006