Locus 4451

Sequence ID X_DroMel_CAF1
Location 11,782,659 – 11,782,776
Length 117
Max. P 0.514975
window7312

overview

Window 2

Location 11,782,659 – 11,782,776
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.38
Mean single sequence MFE -37.90
Consensus MFE -27.13
Energy contribution -27.00
Covariance contribution -0.13
Combinations/Pair 1.41
Mean z-score -1.91
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.514975
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11782659 117 - 22224390
---CAGCUGAGGAGAUGGACCAGGCGGACAUGGAACUGCGGGAGACCAUCACGAACAUCUGGCCAUUGCAGGCGAAGAAGAUGCUAAACCUGCUGGUGCCGCCCAGCGAUCAGCUCAACA
---.((((((((.(((((.((((((((........))))((....))...........)))))))))(((..(......).)))....))((((((......)))))).))))))..... ( -41.70)
>DroVir_CAF1 15367 118 - 1
C--UAGCGGAGGAAAUGGAUCAGGCGGACAUAGAGCUCCGGGAAACCAUCACGAACAUUUGGCCAUUGCAGGCCAAGAAAAUGUUGAAUCUUUUGGUACCUCCCAUUGAUCAAUUGAACA
.--..(.(((((.((.((((..((((((........)))((....))..........(((((((......))))))).....)))..)))).))....))))))................ ( -30.50)
>DroGri_CAF1 13794 118 - 1
G--UAGCUGAGGAAAUGGACCAGGCGGACAUGGAACUCAGGGAAACCAUCACAAACAUCUGGCCAUUGCAGGCCAAGAAAAUGUUAAACUUACUGGUUCCACCCAUUGAUCAGCUAAACA
.--(((((((...(((((.((....))...((((((.((((....))......(((((((((((......)))).)))...))))........)))))))).)))))..))))))).... ( -41.40)
>DroWil_CAF1 20508 118 - 1
A--CAGCUGAGGAAAUGGAUCAGGCGGAUAUGGAGCUCAGGGAAACUAUUACAAACAUUUGGCCACUGCAGGCAAAGAAAAUGCUGAAUCUACUGGUGCCACCGAUCGAUCAGUUGAAUA
.--(((((((.....(.((((.((.((.((((((..(((((....).........(((((.(((......))).....))))))))).)))).))...)).)))))).)))))))).... ( -32.10)
>DroMoj_CAF1 16321 120 - 1
CUGUAGCUGAGGAAAUGGACCAGGCGGACCUAGAGCUCAGGGAAACCAUCACGAACAUCUGGCCAUUGCAGGCAAAGAAAAUGCUGAAUCUGCUGGUUCCGCCCAUCGAUCAGUUGAACA
...(((((((((.......)).((((((((((((..(((((....))..........(((.(((......)))..)))......))).))))..)).))))))......))))))).... ( -35.90)
>DroAna_CAF1 11891 118 - 1
G--CAGCUGAGGAGAUGGACCAGGCGGACUUGGAACUCAGGGAAACCAUCACCAACAUUUGGCCACUGCAGGCGAAGAAGAUGCUGAACCUGCUGGUGCCGCCCAGUGAUCAGCUGAACA
.--(((((((((.((((..(((((....)))))..)...((....))))).))..((((.((((((((((((...((......))...))))).))))..))).)))).))))))).... ( -45.80)
>consensus
C__CAGCUGAGGAAAUGGACCAGGCGGACAUGGAACUCAGGGAAACCAUCACGAACAUCUGGCCAUUGCAGGCAAAGAAAAUGCUGAACCUGCUGGUGCCGCCCAUCGAUCAGCUGAACA
...(((((((...((((((((((..((............((....))........(((((.(((......))).....))))).....))..))))).....)))))..))))))).... (-27.13 = -27.00 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:21 2006