Locus 4449

Sequence ID X_DroMel_CAF1
Location 11,777,872 – 11,777,991
Length 119
Max. P 0.854358
window7310

overview

Window 0

Location 11,777,872 – 11,777,991
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 81.04
Mean single sequence MFE -31.89
Consensus MFE -26.72
Energy contribution -27.22
Covariance contribution 0.50
Combinations/Pair 1.10
Mean z-score -1.77
Structure conservation index 0.84
SVM decision value 0.80
SVM RNA-class probability 0.854358
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11777872 119 + 22224390
UUCGGCUCGAAACUUAUGGAGCCCUGACGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGGAGGCAGUUAAAGAAAGAUUGUUUCUACGGUUUUUUUUUUUUUUUUUGGAUUUUGCG
.....(((((....(((((.(((((((((...........)))).)))))..))))))))))...((((..(((((((((((((....))))))))))))).............)))). ( -33.56)
>DroVir_CAF1 9186 91 + 1
UUCGGCUCAAAACUUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCUGCCAUAUCGAGCAGGCAGUUAAAGAAUGAUUGUUUCUAUU----------------------------
....((((......(((((((((((...((((.......))))..)))))).)))))..))))(((((((((.....))))))))).....---------------------------- ( -28.30)
>DroGri_CAF1 7918 93 + 1
UUUGGCUCGAAACUUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGCAGGCAAUUAAAGAAUGAUUGUUUCUAUU--UU------------------------
....((((((....(((((.(((((...((((.......))))..)))))..)))))))))))(((((((((.....))))))))).....--..------------------------ ( -31.70)
>DroEre_CAF1 7648 108 + 1
UUCGGCUCGAAACUUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGGAGGCAGUUAAAGAAUGAUUGUUUCUACGGAUUU-----------UGCGAUUUUGAG
.....(((((((..(((((.(((((...((((.......))))..)))))..)))))(((.(((((((((((.....))))))))))).)))....-----------.....))))))) ( -35.10)
>DroWil_CAF1 13782 102 + 1
UUCGGCUCGAAACAUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGGAGGCAAUUAAAGAACGAUUGUUUCUAUU--UUU---------GGUUUGGU------
.....(((((....(((((.(((((...((((.......))))..)))))..))))))))))(((((((((.......)))))))))....--...---------........------ ( -30.50)
>DroAna_CAF1 7640 100 + 1
UUCGGCUCGAAACUUAUGGAACCCUGACGCGAUCCUCCUUUGUCAAGGGCGGCCAUGUCGAGGAGGCAGUUAAAAAAUGACUGUUUCUACGGAUUG-----------CACG--------
((((.(((((....(((((..((((((((...........)))).))))...))))))))))((((((((((.....))))))))))..))))...-----------....-------- ( -32.20)
>consensus
UUCGGCUCGAAACUUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGGAGGCAGUUAAAGAAUGAUUGUUUCUACG__UUU___________U__G________
.....(((((....(((((.(((((...((((.......))))..)))))..))))))))))((((((((((.....))))))))))................................ (-26.72 = -27.22 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:19 2006