Locus 4442

Sequence ID X_DroMel_CAF1
Location 11,763,031 – 11,763,130
Length 99
Max. P 0.565726
window7297

overview

Window 7

Location 11,763,031 – 11,763,130
Length 99
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 75.84
Mean single sequence MFE -38.28
Consensus MFE -20.33
Energy contribution -20.75
Covariance contribution 0.42
Combinations/Pair 1.45
Mean z-score -1.64
Structure conservation index 0.53
SVM decision value 0.06
SVM RNA-class probability 0.565726
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11763031 99 + 22224390
AGAUGAGCACAUUCCGGCUAUCCCGCUGACUGGCCUCGAUAAACGGCACCGGCGCCAGCGUGAUGGUGCAGUACGUCUCACUGGCGCCCGGA------UAGCCCA
...............((((((((.........(((.........)))...((((((((.(.((((........)))).).)))))))).)))------))))).. ( -41.70)
>DroVir_CAF1 28839 99 + 1
AGAUUAACACGUGUCGGUUAUCUUUCUGAUGUGCCUCAAUGAAAGGCACUGGCGCCAGCGUUAUAGUACAGUAUAUGCUGCUGGUGCCCGGC------CAGGCCA
............(((((........)))))((((((.......)))))).((((((((((.((((........)))).)))))))))).(((------...))). ( -36.10)
>DroPse_CAF1 25584 105 + 1
AGAUGAGCACAUGCCGGUGGUCCUUCUGAUGCGCCUCGAUAAAGGGCACCGGCGCCAGGGUAAUGGUGCAGUAGGUGUCGCCAUUGCCCGGCGAUGUCCAGGGCA
.(.((..(((..(((((((.(((((.(((......)))...))))))))))))(((.(((((((((((((.....)).))))))))))))))).))..))...). ( -47.20)
>DroGri_CAF1 18697 99 + 1
AGAUCAGCACAUGACGAUUAUCCUUCUGAUGCGCCUCAAUGAACGGCACCGGCGCCAGCGUAAUUGUACAAUACACUUCACUAGUGCCCGGA------AAAGCCA
.((...(((((.((.(......).)))).)))...)).......(((.(((((((.((.(.((.((((...)))).))).)).))).)))).------...))). ( -20.90)
>DroEre_CAF1 45558 99 + 1
AGAUGAGCACAUUCCGGCUAUCCCGCUGACUGGCCUCGAUGAAGGGCACCGGCGCCAGUGUGAUGGUGCAGUACGUCUCACUGGCACCCGGA------CAGCCCA
.........((((..(((((((.....)).)))))..))))..((((.((((.(((((((.((((........)))).)))))))..)))).------..)))). ( -42.20)
>DroMoj_CAF1 23008 99 + 1
AGAUGAGCACGUGUCGAUGGUCCUUCUGAUGCACCUCAAUGAACGGCACGGGCGCCAGCGUGAUCGUGCAGUAGAUGCUGCUGGUGCCCGGC------CAGGCCA
...((((...(((((((.......)).)))))..))))......(((.((((((((((((..(((........)))..))))))))))))))------)...... ( -41.60)
>consensus
AGAUGAGCACAUGCCGGUUAUCCUUCUGAUGCGCCUCAAUGAACGGCACCGGCGCCAGCGUGAUGGUGCAGUACAUGUCACUGGUGCCCGGA______CAGGCCA
............((((................(((.........)))...((((((((.(.((((........)))).).))))))))))))............. (-20.33 = -20.75 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:07 2006