Locus 4427

Sequence ID X_DroMel_CAF1
Location 11,688,879 – 11,688,982
Length 103
Max. P 0.608008
window7277

overview

Window 7

Location 11,688,879 – 11,688,982
Length 103
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 86.89
Mean single sequence MFE -33.70
Consensus MFE -23.16
Energy contribution -24.73
Covariance contribution 1.56
Combinations/Pair 1.15
Mean z-score -1.66
Structure conservation index 0.69
SVM decision value 0.15
SVM RNA-class probability 0.608008
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11688879 103 - 22224390
ACGGCACGCAACUACCGAUGGCCGUCCGUCGAUAGGCAGGCGCUAUCGAGAUGAGCUAGAUACCGAUGUGGGCUAUAUCGAUACAUUGCUUAAACUUUCGAUU
......(((..(((.((((((....)))))).)))....)))..((((((((((((....((.(((((((...))))))).))....)))))...))))))). ( -28.60)
>DroSec_CAF1 2086 103 - 1
ACGGCACGCAACUAGCGAUGGCCGUCCGUCGAUAGGCAGGCUUUGUCGAGAUGAGCGAGAUACCCAUGUAGGGUAUAUCGAUACAUUGCUUAAACUUUCGAUU
..(((.(((.....)))...)))(((.(((....))).)))...((((((((((((((.((((((.....)))))).........)))))))...))))))). ( -33.50)
>DroSim_CAF1 3246 103 - 1
ACGGCACGCAACUAGCGAUGGCCGUCCAUCGAUAGGCAGGCUUUGUCGAGAUGAGCGAGAUACCCAUGUAGGGUAUAUCGAUACAUUGCUUAAACUUUCGAUU
(((((.(((.....)))...)))))..(((((.((..((((..(((.........(((.((((((.....)))))).)))..)))..))))...)).))))). ( -33.20)
>DroYak_CAF1 2173 100 - 1
ACGGCACGCAACUAGCGAUGGCCGUAAGCCGAUAGACAGGCGCUCUCGAGAUGUCCGA--UA-CCACGUUGGGCAUUUCGAUAUAUCGCUGAAGCUUUCGAUU
(((((.(((.....)))...)))))....(((.((...((((...(((((((((((((--(.-....)))))))))))))).....))))....)).)))... ( -39.50)
>consensus
ACGGCACGCAACUAGCGAUGGCCGUCCGUCGAUAGGCAGGCGCUGUCGAGAUGAGCGAGAUACCCAUGUAGGGUAUAUCGAUACAUUGCUUAAACUUUCGAUU
(((((.(((.....)))...)))))..(((((.((..(((((.((((((.(((..(((.((....)).)))..))).))))))...)))))...)).))))). (-23.16 = -24.73 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:48 2006