Locus 442

Sequence ID X_DroMel_CAF1
Location 1,303,201 – 1,303,300
Length 99
Max. P 0.845518
window682

overview

Window 2

Location 1,303,201 – 1,303,300
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.32
Mean single sequence MFE -34.22
Consensus MFE -17.63
Energy contribution -17.43
Covariance contribution -0.19
Combinations/Pair 1.32
Mean z-score -2.23
Structure conservation index 0.52
SVM decision value 0.77
SVM RNA-class probability 0.845518
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1303201 99 + 22224390
GCCA---CCAAAGACGAUAGCUUAAAGGAAACUGUGGCCGAGUUUCUGGCCACCGAGAAGAUUGUUUCCGCCAAGGAAGCCUUCAGCACUGAAGCCACUAAG
....---............((((..((....))(((((((......)))))))...((((...((((((.....)))))))))).......))))....... ( -27.40)
>DroPse_CAF1 56171 99 + 1
UGCA---CCAGAGAUGAAAGUCUCAAGGAGACCGUGGCCGAGUUUCUGGCCACGGAGAAGAUCGUCUCGGCCAAGGAAACAUUCAGUGCCGAGGCUUCCAAG
....---...(((((....)))))..((((.(((((((((......)))))))))........(((((((((..(....).....).))))))))))))... ( -44.20)
>DroEre_CAF1 37342 99 + 1
GCCA---CCAAAGACGACAGCUUAAAGGAAACUGUGGCCGAGUUCCUGGCCACCGAGAAGAUUGUCUCCGCCAAGGAAGCCUUCAGCGCUGAAGCGACCAAG
....---.....((.((((((((..((....))(((((((......)))))))....))).)))))))......((..((.((((....))))))..))... ( -28.80)
>DroMoj_CAF1 54007 97 + 1
AUCAG--UAA---AGGACAGUCUCAAGGAAACGGUAGCUGAAUUUUUGGCAACGGAGAAAAUAGUUUCUGCCAAGGAAACCUUCAGCGCUGAGGCAACCAAA
.....--...---.((...((((((.(....)....((((((((((((....)))))).....((((((.....)))))).))))))..))))))..))... ( -29.10)
>DroAna_CAF1 32368 102 + 1
UCCAGUUCCAAGGAGGAGAACCUGAAGGAGACAGUCGCCGAGUUCCUGGCCACCGAGAAGAUCGUCUCCGCCAAGGAGACAUUCAGCGCCGAAGCGGCCAAA
(((........)))((((....(((.(....)..))).....))))(((((........((..((((((.....))))))..)).((......))))))).. ( -31.60)
>DroPer_CAF1 55861 99 + 1
UGCA---CCAGAGAUGAAAGUCUCAAGGAGACCGUGGCCGAGUUUCUGGCCACGGAGAAGAUCGUCUCGGCCAAGGAAACAUUCAGUGCCGAGGCUUCCAAG
....---...(((((....)))))..((((.(((((((((......)))))))))........(((((((((..(....).....).))))))))))))... ( -44.20)
>consensus
UCCA___CCAAAGACGAAAGCCUCAAGGAAACCGUGGCCGAGUUUCUGGCCACCGAGAAGAUCGUCUCCGCCAAGGAAACAUUCAGCGCCGAAGCGACCAAG
...................((((...((((((.(((((((......))))))).((.....))))))))((...(....).....))....))))....... (-17.63 = -17.43 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:42 2006