Locus 4410

Sequence ID X_DroMel_CAF1
Location 11,634,398 – 11,634,518
Length 120
Max. P 0.920176
window7248

overview

Window 8

Location 11,634,398 – 11,634,518
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -23.22
Consensus MFE -20.32
Energy contribution -20.32
Covariance contribution -0.00
Combinations/Pair 1.13
Mean z-score -1.93
Structure conservation index 0.87
SVM decision value 1.13
SVM RNA-class probability 0.920176
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11634398 120 - 22224390
UUUCAAAAAUUCUCUAACACAACAUCAAAUAUUUAAAGUACAAGUAUAAAUAGUUUCAUAUUUGAAGUGCGUCAACUUUAAAGUAGCACAUUUGAUGCACUCGAAUGUUAAAUAGGGAAA
.........((((((.............((((((.......)))))).....((((.((((((((.(((((((((................))))))))))))))))).)))))))))). ( -24.49)
>DroSec_CAF1 7716 120 - 1
UUUCAAAAAUUUUCUAACACAGCAUCCAAUAUUUAAAGUACAAGUAUAAAUAGUUUGGUAUUUGAAGUGCGUCAACUUUAAAUUAGCACAUUUGAUGCACUCGAAUGGUAAAUAGGAAAA
........................(((.((((((.......)))))).....(((((.(((((((.(((((((((................)))))))))))))))).))))).)))... ( -24.39)
>DroSim_CAF1 7022 115 - 1
UUUCAAAAAUUCUCGAAC-----AUCAAAUAUUUAAAGUACAAGUAUAAAUAGUUUGGUAUUUGAAGUGCGUCAACUUUGAAUUAGCACAUUUGAUGCACUCGAAUGGUAAAUAGGAAAA
((((..............-----.....((((((.......)))))).....(((((.(((((((.(((((((((.(.((......)).).)))))))))))))))).)))))..)))). ( -23.80)
>DroEre_CAF1 8219 120 - 1
UUCUGAAAAUUCUUAAACACAACAUGAAAUAUUAAAAAUACAAGUAUAAAUAGUUUGGUAUUUGAAGUGCGUCCACUUGAAAGUAGCACAUUUGAUGCACUCGAAUAGUAAAUAGGAAAG
.........(((((..............(((((.........))))).....(((((.(((((((.(((((((....((.........))...)))))))))))))).)))))))))).. ( -20.20)
>consensus
UUUCAAAAAUUCUCUAACACAACAUCAAAUAUUUAAAGUACAAGUAUAAAUAGUUUGGUAUUUGAAGUGCGUCAACUUUAAAGUAGCACAUUUGAUGCACUCGAAUGGUAAAUAGGAAAA
((((........................((((((.......)))))).....(((((.(((((((.(((((((((................)))))))))))))))).))))).)))).. (-20.32 = -20.32 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:23 2006