Locus 440

Sequence ID	X_DroMel_CAF1
Location	1,293,894 – 1,294,009
Length	115
Max. P	0.778445

overview

Window 6

Location	1,293,894 – 1,294,009
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	88.55
Mean single sequence MFE	-28.07
Consensus MFE	-24.95
Energy contribution	-23.20
Covariance contribution	-1.75
Combinations/Pair	1.28
Mean z-score	-1.59
Structure conservation index	0.89
SVM decision value	0.55
SVM RNA-class probability	0.778445
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1293894 115 - 22224390
AUCAAGAGAACUUUCAUCCUUAUGAGUUUUGGCAAUGGAUUCUCGUCGACUCUCUGCUUUUCCUGCUUCGUCUUUGACGCUUUCCGCUACAGAUUCCGGUCGAGAAGCUUCUCCU
.....((((((((((..((....((((((((((...(((....((((((......((.......)).......))))))...))))))).)))))).))..))).)).))))).. ( -25.42)
>DroSec_CAF1 26555 115 - 1
AUCAAGAGAACUUUCAUCCUUAUGAGUUUUGACAAUGGAUUCUCGUCGACUCUCUGCUUUUCCUGCUUCAUCUUUGACGCUUUCCGCUACAGAUUCCGGUCGAGAAACUUCUCCU
.....(((((.((((........((((((.......))))))...((((((.((((........((.(((....))).)).........))))....)))))))))).))))).. ( -24.23)
>DroEre_CAF1 28074 115 - 1
GUCAAGAGAACUUUCAUCCUUGUGAGUUUCGGCAACGGAUUCUCGUCGACUCUCCGGUUUUGCUGCUUCAUCUUUGACGCUUUCCGCAACGGAUUCCGGUCGAGAAACUUCUUUU
...(((((((.((((........(((.((((....))))..))).((((((.((((...((((.((.(((....))).)).....))))))))....)))))))))).))))))) ( -33.60)
>DroYak_CAF1 27148 115 - 1
AUCAGAAGAACUUUCAUCCUUAGGAGUUUUGGCAAGUGAUUCUCGUCGGCUCUCUGAUUUUCCUGCAUCAUCUUUGAUGUUUUCCGUAACAGAUCCCGGUCGAGAAACUUCUUUU
...(((((.((((((((((...)))....))).))))..((((((((((...((((........((((((....)))))).........))))..)))).)))))).)))))... ( -29.03)
>consensus
AUCAAGAGAACUUUCAUCCUUAUGAGUUUUGGCAAUGGAUUCUCGUCGACUCUCUGCUUUUCCUGCUUCAUCUUUGACGCUUUCCGCAACAGAUUCCGGUCGAGAAACUUCUCCU
.....(((((.((((........(((..((.......))..))).((((((.((((........((.(((....))).)).........))))....)))))))))).))))).. (-24.95 = -23.20 +  -1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:36 2006