Locus 4396

Sequence ID X_DroMel_CAF1
Location 11,570,774 – 11,570,864
Length 90
Max. P 0.571337
window7220

overview

Window 0

Location 11,570,774 – 11,570,864
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 92.04
Mean single sequence MFE -29.92
Consensus MFE -25.42
Energy contribution -26.82
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.85
SVM decision value 0.08
SVM RNA-class probability 0.571337
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11570774 90 - 22224390
-GAAUCAGGAUUGGAGGAGUGACGCCUAACCGGGUCAAGUGGUCGUCGACGGCGUCGAAGAACGCAGCACGUGAUGCGGAUCCGAUUGGAA
-...((..(((((((((.......))...(((.((((.((((((...))).((((......))))..))).)))).))).))))))).)). ( -27.70)
>DroSec_CAF1 12266 90 - 1
-GAAUCAGGAUUGGAGGAGUGACGCCUAACCGGGUCAAGUGGUCGUCGAUGGCGUCCAAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA
-........................(((((((((((...(((.(((.....))).)))....((((........))))))))))))))).. ( -31.80)
>DroSim_CAF1 13336 90 - 1
-GAAUCAGGAUUGGAGGAGUGACGCCUAACCGGGUCAAGUGGUCGUCGACGGCGUCCAAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA
-........................(((((((((((...(((.(((.....))).)))....((((........))))))))))))))).. ( -31.80)
>DroEre_CAF1 11987 90 - 1
-GAAUCAGGAUUGGAGCAAUGACGACUAACCGGGUCAAGUGGUCGUCGACGGCGUCCAAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA
-........................(((((((((((...(((.(((.....))).)))....((((........))))))))))))))).. ( -32.00)
>DroYak_CAF1 12563 81 - 1
GGAAUCAGGAUUGGAGGAGUGACGACUAACCGGGUCGAGUGGUCGUC----------AAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA
....((..(((((((....(((((((((..((...))..))))))))----------)....((((........))))..))))))).)). ( -26.30)
>consensus
_GAAUCAGGAUUGGAGGAGUGACGCCUAACCGGGUCAAGUGGUCGUCGACGGCGUCCAAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA
.........................(((((((((((...(((.(((.....))).)))....((((........))))))))))))))).. (-25.42 = -26.82 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:57 2006