| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,553,399 – 11,553,519 |
| Length | 120 |
| Max. P | 0.805819 |
| Location | 11,553,399 – 11,553,519 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -21.20 |
| Consensus MFE | -21.20 |
| Energy contribution | -21.53 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11553399 120 - 22224390 AAACCGCUGAGUAAUUAAGUACAUUAUUUAAUAUGUAUGCAUUUUUAAUAAAUGCGCAAGUAGACAAAUUAUAUGCACUUAACUGCAUGUAAGGGCAACUUUUUAACCAACCAACAACAU ...((((...........((((((........))))))((((((.....))))))))...........(((((((((......))))))))))).......................... ( -22.50) >DroSec_CAF1 19637 120 - 1 AAACCGCUGAUUAAUUAUGUACAUUAUUUAAUAUGUAUGCAUUUUUAUUAAAUGCGCAAGUAGACAAAUUCUAUGCACUUAACUGCAUGUAAGGGCAACUUUUUAACCAACCAACAACAU .....((...........((((((........))))))((((((.....))))))))..............((((((......)))))).((((....)))).................. ( -18.70) >DroSim_CAF1 20270 120 - 1 AAACCGCUGAUUAAUUAUGUACAUUAUUUAAUAUGUAUGCAUUUUUAUUAAAUGCGCAAGUAGACAAAUUAUAUGCACUUAACUGCAUGUAAGGGCAACUUUUUAACCAACCAACAACAU ...((((...........((((((........))))))((((((.....))))))))...........(((((((((......))))))))))).......................... ( -22.40) >consensus AAACCGCUGAUUAAUUAUGUACAUUAUUUAAUAUGUAUGCAUUUUUAUUAAAUGCGCAAGUAGACAAAUUAUAUGCACUUAACUGCAUGUAAGGGCAACUUUUUAACCAACCAACAACAU ...((((...........((((((........))))))((((((.....))))))))...........(((((((((......))))))))))).......................... (-21.20 = -21.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:46 2006