Locus 4386

Sequence ID X_DroMel_CAF1
Location 11,539,273 – 11,539,372
Length 99
Max. P 0.885597
window7205

overview

Window 5

Location 11,539,273 – 11,539,372
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 97.17
Mean single sequence MFE -16.74
Consensus MFE -15.98
Energy contribution -16.18
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.95
SVM decision value 0.94
SVM RNA-class probability 0.885597
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11539273 99 - 22224390
AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAUAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA
...........((..(((((.(((((((..(((........))).....)))))))))))).......((((......)))).......))........ ( -16.90)
>DroSec_CAF1 5093 99 - 1
AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAAAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA
...........((..(((((.(((((((..(((........))).....)))))))))))).......((((......)))).......))........ ( -16.90)
>DroSim_CAF1 5165 99 - 1
AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAUAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA
...........((..(((((.(((((((..(((........))).....)))))))))))).......((((......)))).......))........ ( -16.90)
>DroEre_CAF1 5214 99 - 1
AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAUAGCCCACGCGGCAGUCGAAGAACGUUAGCAAAAACGAAAAAUUCCAUACGAAA
.........(((......((.((((((((.(((........)))...).)))))))))..........((((......))))............))).. ( -16.20)
>DroYak_CAF1 5107 99 - 1
AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGCAUAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA
...........((..(((((.(((((((...(((.....))).......)))))))))))).......((((......)))).......))........ ( -16.80)
>consensus
AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAUAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA
...........((..(((((.(((((((...(((.....))).......)))))))))))).......((((......)))).......))........ (-15.98 = -16.18 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:43 2006