Locus 4368

Sequence ID X_DroMel_CAF1
Location 11,478,432 – 11,478,528
Length 96
Max. P 0.612604
window7173

overview

Window 3

Location 11,478,432 – 11,478,528
Length 96
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 82.62
Mean single sequence MFE -20.24
Consensus MFE -12.84
Energy contribution -13.15
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value 0.16
SVM RNA-class probability 0.612604
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11478432 96 - 22224390
AUCCAUCUCACUCAGGCCAGU-----CU-CCCCU----CUCGCUCGCGCCCCUCUCUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUC-------C
..............((((...-----..-.....----...((....))..........((((((.....))).)))))))....((((((......))))))..-------. ( -17.20)
>DroSec_CAF1 16539 96 - 1
AUGCAUCUCACUCAGGCCCGU-----CU-ACCCU----CUCGCUUGCUCCCCUCUCUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUC-------C
..............(((((..-----..-((...----...((((((..............)))).))....))..)))))....((((((......))))))..-------. ( -21.04)
>DroSim_CAF1 11455 96 - 1
AUCCAUCUCACUCAGGCCCGU-----CU-ACCCU----CUCGCUUGCUCCCCUCUCUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUC-------C
..............(((((..-----..-((...----...((((((..............)))).))....))..)))))....((((((......))))))..-------. ( -21.04)
>DroAna_CAF1 25109 112 - 1
GUCCGUUGCACUCCGGAUACUGUUAUCUCACUCUCUCCCUCGCUUUCUCCU-CCUUUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUCACAGUGCC
(((((........)))))(((((............................-.....(((((....((((......)))))))))((((((......))))))..)))))... ( -21.70)
>consensus
AUCCAUCUCACUCAGGCCAGU_____CU_ACCCU____CUCGCUUGCUCCCCUCUCUAAUUGCAAUGCCUUUGUCAGGGCCAAUUGGUGUUCCACUUAGCACCUC_______C
..............................((((.......((((((..............)))).)).......))))......((((((......)))))).......... (-12.84 = -13.15 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:14 2006