Locus 4366

Sequence ID X_DroMel_CAF1
Location 11,468,553 – 11,468,658
Length 105
Max. P 0.655185
window7170

overview

Window 0

Location 11,468,553 – 11,468,658
Length 105
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 89.73
Mean single sequence MFE -19.33
Consensus MFE -16.67
Energy contribution -17.00
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.86
SVM decision value 0.25
SVM RNA-class probability 0.655185
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11468553 105 - 22224390
UUUGUGAAAUUCCAUAAAAAAAAAUGGCAAUAAAAUACUGUGCUAAUAAAGCGCGACUCACAC--------ACACACGUGUCGAAAAGGCCAUUAAAUGAACUUUAUCACCGA
((((((......))))))....((((((..........((((((.....))))))..((((((--------......)))).))....))))))................... ( -20.90)
>DroSec_CAF1 13788 104 - 1
AAUGUGA-AUUCCAUAA----AAAUGGCAAUAAAAUACUGGGCUAAUAAAGCGCGACUCACACAC----ACACACACGUGUCGAAAAGGCCAUUUAAUGAACUUUAUCACCGA
...((((-....(((..----(((((((..........((.(((.....))).))..((((((..----........)))).))....))))))).))).......))))... ( -17.30)
>DroSim_CAF1 8678 109 - 1
UAUGUGAAAUUCCAUAA----AAAUGGCAAUAAAAUACUGUGCUAAUAAAGCGCGACUCACACACACACACACACACGUGUCGAAAAGGCCAUUUAAUGAACUUUAUCACCGA
...((((.....(((..----(((((((..........((((((.....))))))............((((......)))).......))))))).))).......))))... ( -19.80)
>consensus
UAUGUGAAAUUCCAUAA____AAAUGGCAAUAAAAUACUGUGCUAAUAAAGCGCGACUCACACAC____ACACACACGUGUCGAAAAGGCCAUUUAAUGAACUUUAUCACCGA
..(((((.(((((((........)))).))).......((((((.....))))))..)))))..............((.((.((((((..(((...)))..)))).)))))). (-16.67 = -17.00 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:11 2006