Locus 4357

Sequence ID X_DroMel_CAF1
Location 11,458,368 – 11,458,460
Length 92
Max. P 0.567457
window7158

overview

Window 8

Location 11,458,368 – 11,458,460
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 95.87
Mean single sequence MFE -20.30
Consensus MFE -19.82
Energy contribution -20.26
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.04
Structure conservation index 0.98
SVM decision value 0.07
SVM RNA-class probability 0.567457
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11458368 92 - 22224390
AAAAAAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG
.................((.(((((((..(((.(((.......)))...((((.......))))...))).(((....)))))))))).)). ( -22.60)
>DroSec_CAF1 3857 91 - 1
-GAAAAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG
-................((.(((((((..(((.(((.......)))...((((.......))))...))).(((....)))))))))).)). ( -22.60)
>DroSim_CAF1 3266 92 - 1
AAAAAAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG
.................((.(((((((..(((.(((.......)))...((((.......))))...))).(((....)))))))))).)). ( -22.60)
>DroEre_CAF1 3733 90 - 1
AAA--AAAAUCAUAUAUUCUCUCAGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG
...--............((.(((.(((..(((.(((.......)))...((((.......))))...))).(((....)))))).))).)). ( -17.00)
>DroYak_CAF1 3685 91 - 1
AAA-AAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACACGCUGGAGCGAG
...-.............((.(((((....(((.(((.......)))...((((.......))))...)))..((....))...))))).)). ( -16.70)
>consensus
AAAAAAAAAUCAUAUAUUCCCUCCGAUACGCCGGUGAUAAGAACGCAACGCCAAGGACAAUGGCAAAGGCUUUGAUAACAGGUCGGAGCGAG
.................((.(((((((..(((.(((.......)))...((((.......))))...))).(((....)))))))))).)). (-19.82 = -20.26 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:00 2006