| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,455,659 – 11,455,758 |
| Length | 99 |
| Max. P | 0.790210 |
| Location | 11,455,659 – 11,455,758 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -46.57 |
| Consensus MFE | -38.51 |
| Energy contribution | -38.73 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.790210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11455659 99 - 22224390 ------------CGUUCCUCUCGCAGCACCCUGGCCAUGGCCACCAGGACAAUAUCAUUGCCGCUAAUCCCGUGCAGCGCCGCCUGGGCAAUGGCAUCGUGCUGGGGCGGC--- ------------..........((.((((..((((....))))...((.((((...)))))).........)))).))(((((((.((((.((....)))))).)))))))--- ( -38.20) >DroVir_CAF1 5196 104 - 1 U----------GGACUCCUCACGCAUUACGCGUGCCAUGGCCACCAGGACGAUGUCGUUGCCGCUGAUGCCGUGCAGCGCCGCCUGGGCGAUCGCAUCGUGUUGCGGCAGGCAG (----------((......(((((.....))))))))..(((.....((((....))))(((((.(((((.((((..((((.....))))...)))).)))))))))).))).. ( -42.20) >DroPse_CAF1 5416 114 - 1 UCUGCCCGGACUCGAUCCUCGCGCAGCACACGGGCCAUGGCCACCAGGACGAUGUCGUUGCCACUGAUGCCAUGCAGUGCCGCCUGGGCAAUGGCAUCGUGCUGGGGCAGGCAA ((((((((((.....))).....((((((...(((....)))........((((((((((((((((........)))))((....))))))))))))))))))))))))))... ( -53.20) >DroMoj_CAF1 5352 104 - 1 U----------UGACUCCUCGCGCAUCACUCGCGCCAUGGCCACCAGGACGAUGUCGUUGCCGCUGAUCCCAUGCAGCGCUGCCUGUGCAAUGGCAUCGUGCUGGGGCAGGCAG .----------.........(((.......)))(((...(((.((((.((((((((((((((((((........)))))........))))))))))))).))))))).))).. ( -48.60) >DroAna_CAF1 5189 99 - 1 ------------CGCUCCUCUCUUAGGACACGGGCCAUGGCCACCAGGACGAUGUCAUUGCCACUGAUCCCGUGCAGUGCCGCCUGGGCGAUGGCGUCGUGUUGGGGCGGU--- ------------((((((........((((((((((((.(((..((((.((..(.((((((.((.......)))))))))))))))))).))))).)))))))))))))..--- ( -45.50) >DroPer_CAF1 7091 114 - 1 UCUGCCCGUACACGAUCCUCGCGCAGCACACGGGCCAUGGCCACCAGGACGAUGUCGUUGCCACUGAUGCCAUGCAGUGCCGCCUGGGCAAUGGCAUCGUGCUGGGGCAGGCAA (((((((...(.((.....)).)((((((...(((....)))........((((((((((((((((........)))))((....))))))))))))))))))))))))))... ( -51.70) >consensus U___________CGCUCCUCGCGCAGCACACGGGCCAUGGCCACCAGGACGAUGUCGUUGCCACUGAUCCCAUGCAGCGCCGCCUGGGCAAUGGCAUCGUGCUGGGGCAGGCA_ .................................(((...(((.((((.((((((((((((((((((........)))))((....))))))))))))))).))))))).))).. (-38.51 = -38.73 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:59 2006