Locus 4351

Sequence ID X_DroMel_CAF1
Location 11,451,917 – 11,452,037
Length 120
Max. P 0.695937
window7149

overview

Window 9

Location 11,451,917 – 11,452,037
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.17
Mean single sequence MFE -41.54
Consensus MFE -36.68
Energy contribution -37.60
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -1.26
Structure conservation index 0.88
SVM decision value 0.34
SVM RNA-class probability 0.695937
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11451917 120 + 22224390
GAAACAGGACGAGGAUGAGGGACCUCAGGAGCUGUUGGCCAGGCCCAAGGAAUAUAUUGUCAAGUUCCGCUUCCCGGAGCCAUCGCAGCUCCAGCCACCCAUUCUGGGUGUCCACAAUGU
......((((..((.((((....))))(((((((((((((.((.....(((((..........))))).....)).).))))..))))))))..))((((.....))))))))....... ( -46.60)
>DroSec_CAF1 5848 120 + 1
GAAACAGGACGAGGAUGAGGGACCGCAGGAGCUGCUGGCCAGGCCCAAGGAAUACAUUGUCAAGUUCCGCUUCCCGGAGCCAUCGCAGCUCCAGCCACCCAUUCUGGGUGUCCACAAUGU
......(((((((((((.((....((.(((((((((((((.((.....(((((..........))))).....)).).))))..)))))))).))..))))))))...)))))....... ( -45.60)
>DroSim_CAF1 5262 120 + 1
GAAACAGGACGAGGAUGAGGGACCGCAGGAGCUGCUGGCCAGGCCCAAGGAAUACAUUGUCAAGUUCCGCUUCCCGGAGCCAUCGCAGCUCCAGCCACCCAUUCUGGGUGUCCACAAUGU
......(((((((((((.((....((.(((((((((((((.((.....(((((..........))))).....)).).))))..)))))))).))..))))))))...)))))....... ( -45.60)
>DroEre_CAF1 9207 120 + 1
GAAACUGGACGAUGAUGACGGCCCGCAGGAGCUGCUGGCCAGGCCCAAAGAAUAUAUCGUCAAGUUCCGCUUCCCAGAGCCAUCGCAGCUCCAGCCACCGAUUCUAGGUAUCCACAAUGU
....((((((((((.((((((((.((((...)))).)))).........((.....))))))......((((....)))))))))....)))))..(((.......)))........... ( -33.50)
>DroYak_CAF1 9379 120 + 1
GAAACAGGACGAAGACGAAGGUCCACAGGAGCUGCUGGCCAGGCCCAAAGAAUAUAUCGUCAAGUUCCGCUUCCCAGAGCCAUCGCAGCUCCAGCCACCCAUUUUGGGUAUCCACAAUGU
......(((....(((....)))....(((((((((((((.((......((((..........))))......)).).))))..))))))))....((((.....)))).)))....... ( -36.40)
>consensus
GAAACAGGACGAGGAUGAGGGACCGCAGGAGCUGCUGGCCAGGCCCAAGGAAUAUAUUGUCAAGUUCCGCUUCCCGGAGCCAUCGCAGCUCCAGCCACCCAUUCUGGGUGUCCACAAUGU
......(((((.(((...(((...((.(((((((((((((.((.....(((((..........))))).....)).).))))..)))))))).))..)))..)))...)))))....... (-36.68 = -37.60 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:51 2006