Locus 434

Sequence ID X_DroMel_CAF1
Location 1,262,800 – 1,262,913
Length 113
Max. P 0.840958
window668

overview

Window 8

Location 1,262,800 – 1,262,913
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.47
Mean single sequence MFE -34.62
Consensus MFE -24.76
Energy contribution -26.82
Covariance contribution 2.06
Combinations/Pair 1.15
Mean z-score -2.00
Structure conservation index 0.72
SVM decision value 0.75
SVM RNA-class probability 0.840958
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1262800 113 - 22224390
UUAUGACAAGUCCUAAACGUAGGACG-------GUGGAAGAGGGACGAGUGACGGGGGAUGAGCCUUGUGGUAUCUUGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA
..(((((..((((((....))))))(-------(((((((...((((((.(.(((((((.(((((....))).))......)))))))).)))))).))))))))))))).......... ( -36.80)
>DroSec_CAF1 16924 120 - 1
UUAUGACAAGUCCUAAACGGAGGACGGCUGACGGAGGAAGAGGGACGAGGGACUGGGGAUGAGCCUUGUGGUAUCUUGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA
..((((((((((((......))))).......(((((..(((((..((((((.(.(((((..(((....)))))))).).))))))..)))))....))))).))))))).......... ( -37.80)
>DroEre_CAF1 18504 98 - 1
UUAUGGCAAGUCCUCAACGGAGG--------------GCGAGGGACG--------AGGAUGAGCCUUGUGGUAUCUAGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA
....(((((((((((....))))--------------))(((((..(--------((((.(((((....))).))......)))))..))))).)))))..................... ( -28.30)
>DroYak_CAF1 20503 113 - 1
UUAUGACAAGUCCUAAACGGAGGA------ACGAAGGACGAGGGACGGGAGAU-GGGGAAGAGCCUUGUGGUAUCUUGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA
..(((((((.((((......))))------..((((((((((((..(((((((-.((((...(((....))).)))).)))))))...)))))))..))))).))))))).......... ( -35.60)
>consensus
UUAUGACAAGUCCUAAACGGAGGA_________GAGGAAGAGGGACGAG_GAC_GGGGAUGAGCCUUGUGGUAUCUUGAUUUCCUCUGCUCUUGUUGCUUUCAUUGUUAUUAAUAUUUCA
..(((((((((((((....))))))..............(((.((((((((...(((((.(((((....))).))......)))))..)))))))).)))...))))))).......... (-24.76 = -26.82 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:29 2006