| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,397,245 – 11,397,344 |
| Length | 99 |
| Max. P | 0.648679 |
| Location | 11,397,245 – 11,397,344 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.91 |
| Mean single sequence MFE | -38.15 |
| Consensus MFE | -26.30 |
| Energy contribution | -26.55 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11397245 99 - 22224390 CUGCAGUUUGCUUGUCGCAAUGGGUAUCUUGGAGAUGCUGCCGCC---------ACUGUUUGCCCGAUGGUGGCCAUUGUGCGUCGGUUUGCUGUGAAUUUGGCCGGA ..(((((..(((((.(((((((((((((.....))))))((((((---------(.((......)).))))))))))))))))..)))..)))))............. ( -35.30) >DroSec_CAF1 50435 99 - 1 CUGCAGUUUGCUGGUCGCAAUGGGUAUCUUGGAGAUGCUGCCGCU---------GCUGUUCGCCCGAUGGUGGCCAUUGUGCGUCGGUUUGCUGUGAAUUUGUCCGGA ..(((((..(((((((((((((((((((.....))))))((((((---------..((......))..))))))))))))).))))))..)))))............. ( -34.70) >DroEre_CAF1 56651 99 - 1 CUGCAGCUUGCUGGUCGCAAUGGGUAUCUUGGAGAUGCUGCCGCU---------ACUGUUCGCCCGGUGGUGGCCAUUGUGCGUCGGCUUGCUGUGGAUUUGUCCGGA (..((((..(((((((((((((((((((.....))))))((((((---------((((......))))))))))))))))).))))))..))))..)........... ( -47.00) >DroYak_CAF1 56040 99 - 1 CUGCAGCUUGCUGGUUGCAAUUGGUAUCUUGGAGAUGCUGCCGCU---------ACUGUUCGCCCGAUGGUGGCCAUUGUGCGUCGGCUUGCUGUGCAUUUGGCCGGA .(((((((....)))))))...((((((.....)))))).((...---------((((((.....))))))(((((..(((((.(((....)))))))).))))))). ( -36.00) >DroAna_CAF1 37077 97 - 1 CAGCAGCUUGCUGGUGGCGAUCGGGAUCUUGGAGAUGCUGCCGCU---------GCUGUUCGCCCGGUAGUGGCCGUUGUGCGUCGGCUUGCUGGCAAU--GCUGGGC (((((((.....((..((.(((...........)))))..)))))---------))))...((((((((...(((((...((....))..)).)))..)--))))))) ( -42.40) >DroPer_CAF1 55608 93 - 1 CAGGAGCUUCCCGGUGGCAAUGGGUAUCUUUGAGAUGCUGCUACUGCUCCCAUUGCUGUGGGCCCGAUGGUGGCCAUUGUGCGUGGGUUUGUU--------------- ...(((((..((.(..((((((((((((.....))))).((....))..)))))))..).)((.((((((...)))))).)))..)))))...--------------- ( -33.50) >consensus CUGCAGCUUGCUGGUCGCAAUGGGUAUCUUGGAGAUGCUGCCGCU_________ACUGUUCGCCCGAUGGUGGCCAUUGUGCGUCGGCUUGCUGUGAAUUUGGCCGGA ..(((((..((((..(((((((((((((.....))))))((((((.......................)))))))))))))...))))..)))))............. (-26.30 = -26.55 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:12 2006