| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,392,529 – 11,392,643 |
| Length | 114 |
| Max. P | 0.593719 |
| Location | 11,392,529 – 11,392,643 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 84.95 |
| Mean single sequence MFE | -25.55 |
| Consensus MFE | -21.18 |
| Energy contribution | -20.68 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11392529 114 - 22224390 AUUCGAGUGUGAAUUUUGUUCGAUUCGAAGUGG-UGUGGAAUCGGAGAAGAUUCUAAAAUUGGUCAGCUUUGGCAGUUUUUUUUUUUUUCGUUUU-C-UUUUUGUUUGAUCGCCUCA .(((((((.(((((...))))))))))))(.((-((.((((.(((((((((....(((((((.((......)))))))))..)))))))))..))-)-)...........)))).). ( -26.20) >DroPse_CAF1 52140 93 - 1 AUUCGAGUGUGAAUUUUGUGCGAUUUGAAGUGGAAGUGGAAUCGGAGAAGAUUCUAAAAUUGGUCAGCUUUGGCAGCG------------------------UGUUUGAUCGCCUCA ....(((.((((.((..(..((..(..((((.((..(((((((......))))))).......)).))))..)...))------------------------..)..))))))))). ( -26.10) >DroSec_CAF1 45852 108 - 1 AUUCGAGAGUGAAUUUUAUUCGAUUCGAAGUGG-UGUGGAAUCGGAGAAGAUUCUAAAAUUGGUCAGCUUUGGCAGUUUUUUUUUUC------UU-C-UUUUUGUUUGAUCGCCUCA .((((((..(((((...))))).))))))(.((-(((.((((.((((((((....(((((((.((......))))))))).....))------))-)-)))..)))).).)))).). ( -26.10) >DroSim_CAF1 17042 108 - 1 AUUCGAGUGUGAAUUUUGUUCGAUUCGAAGUGG-UGUGGAAUCGGAGAAGAUUCUAAAAUUGGUCAGCUUUGGCAGUUUUUUUUUUC------UU-C-UUUUUGUUUGAUCGCUUCA ....((((.(((((...)))))))))(((((((-(.(..(...((((((((....(((((((.((......))))))))).....))------))-)-)))...)..))))))))). ( -27.00) >DroEre_CAF1 52061 99 - 1 AUUCGAGUGUGAAUUUUGUUCGGUUUGAAGUGG-UGUGGAAUCGGAGAAGAUUCUAAAAUUGGUCAGCUUUGGCAGUUUUCUUUUU-----------------GUUUGAUCGCCUCA ....(((.(((((((((.((((((((.(.....-..).)))))))).))))))).......((((((.....((((........))-----------------))))))))))))). ( -23.70) >DroYak_CAF1 51320 116 - 1 AUUCGAGUGUGAAUUUUGUUUGAUUUGAAGUGG-UGUGGAAUCGGAGAAGAUUCUAAAAUUGGUCAGCUUUGGCGUUUUUUUUUUUUUUUUUUUGGCUUUUUGGUUUGAUCGCCUCA ....(((.(((((((((.((((((((.(.....-..).)))))))).))))))).......((((((((..(((.....................)))....)).))))))))))). ( -24.20) >consensus AUUCGAGUGUGAAUUUUGUUCGAUUCGAAGUGG_UGUGGAAUCGGAGAAGAUUCUAAAAUUGGUCAGCUUUGGCAGUUUUUUUUUU_______UU_C_UUUUUGUUUGAUCGCCUCA ....(((.(((((((((.((((((((.(........).)))))))).))))))).......(((((((...................................).))))))))))). (-21.18 = -20.68 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:09 2006