Locus 4322

Sequence ID X_DroMel_CAF1
Location 11,379,431 – 11,379,524
Length 93
Max. P 0.899196
window7100

overview

Window 0

Location 11,379,431 – 11,379,524
Length 93
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 75.50
Mean single sequence MFE -26.68
Consensus MFE -13.16
Energy contribution -12.84
Covariance contribution -0.32
Combinations/Pair 1.41
Mean z-score -2.05
Structure conservation index 0.49
SVM decision value 1.01
SVM RNA-class probability 0.899196
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11379431 93 - 22224390
UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUUUUAUUUUUUCUGUUAUUAUUGUCGCUUCUUCGAUAU-GCGGAU----AUGCA----GCAGGAGAUGAGGA------------
..(((((.(((....))))))))......((((((((((((((((((((..(((((......))))).-...)))----).)))----).))))))))))))------------ ( -21.30)
>DroSec_CAF1 39425 92 - 1
UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUUUUGUU-UUCCUGUUAUUAUUGUCGCUUCUUCGAUAU-GCGGAU----AUGCA----GCAGGAGAUGAGGA------------
..(((((.(((....)))))))).....((((....(-((((((((.....(((((......))))).-(((...----.))))----)))))))).)))).------------ ( -23.60)
>DroEre_CAF1 45661 92 - 1
UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUUUUGAU-UUCCUGUUGUUGUUGUCGCUUCUUCGAUAU-GCGGAU----AUGCA----GCAGGAGAUGAGGA------------
..(((((.(((....)))))))).......((((.((-((((((((((.....((((...........-))))..----..)))----))))))))).))))------------ ( -29.40)
>DroYak_CAF1 44531 92 - 1
UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUGUUGUU-UUCCUGUUAUUAUUGUCGCUUCUUCGAUAU-GCGGAU----AUGCA----GCAGGAGAUGAGGA------------
..(((((.(((....)))))))).....((..((...-.(((((((.....(((((......))))).-(((...----.))))----))))))))..))..------------ ( -22.50)
>DroAna_CAF1 28693 113 - 1
UUUAUUUUCCUUUCGGCUAGGCCCCUCACGCCUCGAG-UCCCGCUUGUUAUUGCUGCCGUUCCGAUAAGGCGGAUGUUGAUGCGGCUCGCAGGAGAUGAGCCACCGACGGUCGA
............((((((.((...(((((.(((((((-..((((..((((...(((((..........)))))....)))))))))))).))).).))))...))...)))))) ( -36.60)
>consensus
UUUAUGCUCAUUUAUGUGGCAUGUUUUACUUUUUGUU_UUCCUGUUAUUAUUGUCGCUUCUUCGAUAU_GCGGAU____AUGCA____GCAGGAGAUGAGGA____________
..((((((((....)).))))))......((((((((..((((((......(((......((((......)))).......)))....))))))))))))))............ (-13.16 = -12.84 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:04 2006