| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,261,590 – 1,261,689 |
| Length | 99 |
| Max. P | 0.724782 |
| Location | 1,261,590 – 1,261,689 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.55 |
| Mean single sequence MFE | -24.93 |
| Consensus MFE | -12.72 |
| Energy contribution | -11.73 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1261590 99 - 22224390 UUAACACUUUAAGUUGGCUUAAAUUUUCGGGAU-AUUUUCACCUAAAUUUUUGAAUAAAU--GCUCAAAAAGGUGGAUCCAACUUGCAAUUUAAGGCC------------------UGGA ...............((((((((((..((((..-...(((((((....((((((......--..))))))))))))).....)))).))))))).)))------------------.... ( -20.70) >DroSec_CAF1 15770 98 - 1 UUAACACUUUAAGUUGGCUUUAAUUGUCUGGAU-ACUUUUUCCUACAUUUUUGAAUAAAU--ACUCAGAAA-GUGGAACCAACUUGCAGUUUAAGGCU------------------UGAA ((((.(((.((((((((.((((..(((..(((.-......))).)))(((((((......--..)))))))-.)))).)))))))).)))))))....------------------.... ( -20.30) >DroYak_CAF1 19275 120 - 1 UUAACACUUUAAGUUGCUUUUCAUUUUUGGACUUGUUUCUACCUUAAACUUUGAAUGAAUUCGCGCAGAGAGGUGGAGCCUACUUGCAACUUAAGGGCUUUAGCUGGGCUACCCGCUCUU ......(((((((((((..((((....)))).....((((((((....(((((..((....))..))))))))))))).......))))))))))).....(((.((....)).)))... ( -33.80) >consensus UUAACACUUUAAGUUGGCUUUAAUUUUCGGGAU_AUUUUUACCUAAAUUUUUGAAUAAAU__GCUCAGAAAGGUGGAACCAACUUGCAAUUUAAGGCC__________________UGAA ......((((((((((.(((........)))......(((((((....(((((............)))))))))))).........))))))))))........................ (-12.72 = -11.73 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:27 2006