Locus 431

Sequence ID X_DroMel_CAF1
Location 1,261,345 – 1,261,455
Length 110
Max. P 0.552056
window665

overview

Window 5

Location 1,261,345 – 1,261,455
Length 110
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 93.49
Mean single sequence MFE -36.45
Consensus MFE -31.12
Energy contribution -31.75
Covariance contribution 0.62
Combinations/Pair 1.06
Mean z-score -1.50
Structure conservation index 0.85
SVM decision value 0.04
SVM RNA-class probability 0.552056
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1261345 110 - 22224390
GACGAUAACCGCAGAAGUCGCGCCGCAUCCGCCAUUGUGUCGCAAUUGCAUUCACAAUCGCUGU----GUUGCAGUUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG
..((.((((.((((..((.(((....(((((((((((((.....((((((..((((.....)))----).)))))))))))))))).)))))).))..)))).))))))..... ( -36.80)
>DroSec_CAF1 15525 110 - 1
GACGAUAACCGCAGAAGUCGCGCCGCAUCCGCCAUUGUGUCGCAAUCGGAUUCGCAAUCGCUGU----GUUGCAGCUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG
..((.((((.((((.((((((((((((((((..((((.....)))))))))..))....((((.----....))))......))))))))).......)))).))))))..... ( -38.00)
>DroEre_CAF1 17174 114 - 1
GACGAUAACCGCAGAAGUCGCGCCGCAUCCGCCAUUGUGUCGCAAUCGGAUUCGCAAUCGCUGUUGCAGUUGCAGCUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG
..((.((((.((((.((((((((((.(((((..((((.....))))))))).)(((((.((....)).))))).........))))))))).......)))).))))))..... ( -39.60)
>DroYak_CAF1 19024 108 - 1
GACGAUAACCGCAAAAGUCACGCCGCAUCCGCCAUUGUGUCGCAAUCGGAUUCGCAAUCGCUGUUG------CAGCUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG
..((.((((.(((...((.(((....((((((((((((((.(((((.((((.....))).).))))------).)).))))))))).)))))).))...))).))))))..... ( -31.40)
>consensus
GACGAUAACCGCAGAAGUCGCGCCGCAUCCGCCAUUGUGUCGCAAUCGGAUUCGCAAUCGCUGU____GUUGCAGCUACAAUGGUGCGAUUGUUACAACUGCAGUUGCGAAAAG
..((.((((.((((.((((((((((.(((((..((((.....))))))))).)......(((((.......)))))......))))))))).......)))).))))))..... (-31.12 = -31.75 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:26 2006