Locus 4308

Sequence ID X_DroMel_CAF1
Location 11,363,231 – 11,363,348
Length 117
Max. P 0.945986
window7084

overview

Window 4

Location 11,363,231 – 11,363,348
Length 117
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 92.43
Mean single sequence MFE -34.10
Consensus MFE -30.08
Energy contribution -29.95
Covariance contribution -0.13
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.88
SVM decision value 1.36
SVM RNA-class probability 0.945986
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11363231 117 - 22224390
ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGGAUUCGGAUUUGGUUUUGGAUUCGGAUCGUAUCGAAUGGCGUUGCCUUUGAUCGCAUUGUUUUUUUUUUCUU
...(((((..(((......))))))))...((((....(((((((((((((((......)))))))))))))))..(((((.(((...))))))))))))................. ( -32.90)
>DroSec_CAF1 24112 112 - 1
ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGGAUUCGGAUUUGGUUUUGGAUUCGGAUCGUAUCGAAUGGCGUUGCCUUUGAUCGC-----UUUUUUUUUCUA
..................((((..((((((((((....(((((((((((((((......)))))))))))))))..(((((.(((...))))))))))))-----))))))..)))) ( -36.20)
>DroEre_CAF1 27811 115 - 1
ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGGAUUCGGAUUUGGACUUGGAUUCGGAUCGUAUCGAAUCGCGUUGCCUUUGAUCGCGUUUUU--UUCUUUUUU
.......((.(((......))).((((((((((.((.(((((...(((((((((((......)))))))))))..))))).)).)))).))))))...))......--......... ( -33.30)
>DroYak_CAF1 29274 115 - 1
ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGAAUUUGGAUUUGGAUUUGGAUUCGGAUCGUAUCGAAUCGCGUUGCCUUUGAUCGCGUUUUU--UUUUUUCUU
.((...((((.(.(((((((...)))))))((((....(((((((((((..(((....)))..))))))))))).......))))).))))..))...........--......... ( -34.00)
>consensus
ACAUUUGGCAUCUUUUUCUGGACCGGAGGAGCGAGAAUCGAUUCGGAUUCGGAUUUGGAUUUGGAUUCGGAUCGUAUCGAAUCGCGUUGCCUUUGAUCGCGUUUUU__UUUUUUCUU
.((...((((.(((((((......)))))))(((....(((((((((((((((......)))))))))))))))..)))........))))..))...................... (-30.08 = -29.95 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:49 2006