Locus 4303

Sequence ID X_DroMel_CAF1
Location 11,352,447 – 11,352,538
Length 91
Max. P 0.916975
window7073

overview

Window 3

Location 11,352,447 – 11,352,538
Length 91
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 92.46
Mean single sequence MFE -19.20
Consensus MFE -16.08
Energy contribution -16.82
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.84
SVM decision value 1.11
SVM RNA-class probability 0.916975
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11352447 91 - 22224390
UGCCAGCGAAAAAUGCGAAAUUAUUAAGCAUUUUUC--------AAGUUAUCCAAUCACAAAGAGACCUUCAAGCUGGUUAACUAAGGAUAAUAAAUGU
.......(((((((((...........)))))))))--------..(((((((..((.....))((((........))))......)))))))...... ( -21.00)
>DroSec_CAF1 13420 91 - 1
UGCCAGCGAAAAAUGCGAAAUUAUUAAGCAUUUUUC--------AAGUUAUCCAAUCACAAAGAGACCUUCAAGCUGGUUAGCUAAGGAUAAUAAAUGU
.......(((((((((...........)))))))))--------..(((((((..((.....))((((........))))......)))))))...... ( -21.00)
>DroEre_CAF1 17026 91 - 1
UGCCAGCGAAAAAUGCGAAAAUAUUAAGCAUUUUUC--------AAGUUAUCCAAUCACAAAGAGACCUUCAAGCUGGUUAGCUAAGGAUAAUAAAUGU
.......(((((((((...........)))))))))--------..(((((((..((.....))((((........))))......)))))))...... ( -21.00)
>DroYak_CAF1 17506 99 - 1
UGCCAACGAAAAAUGCGAAAAUAUUAACAAUUUUUCAAGUUUUCAAGUUAUCCAAUCACAAAAAGACCUUCAAGCUGGUUAGCUAAGGAUAAUAAAUGU
.......(((((....(((((..........)))))...)))))..(((((((...........(.....).((((....))))..)))))))...... ( -13.80)
>consensus
UGCCAGCGAAAAAUGCGAAAAUAUUAAGCAUUUUUC________AAGUUAUCCAAUCACAAAGAGACCUUCAAGCUGGUUAGCUAAGGAUAAUAAAUGU
.......(((((((((...........)))))))))..........(((((((..((.....))((((........))))......)))))))...... (-16.08 = -16.82 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:39 2006