| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,274,146 – 11,274,239 |
| Length | 93 |
| Max. P | 0.525299 |
| Location | 11,274,146 – 11,274,239 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -17.69 |
| Energy contribution | -17.75 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.87 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11274146 93 - 22224390 AGGCGCGAUAGUGGGCAUCCACAAUGUCGCGGGCGUAGACCUGUAAGCCAUUUCAAAAAUAUGUGUUUAAAUAUGAAAAACUAAAACAGGAAU .(((((((((((((....))))..))))))(((......)))....)))..........(((((......))))).................. ( -21.10) >DroSec_CAF1 4435 75 - 1 AGGCGCGAUAGUGGGCAUCCACAAUGUCGCGUGCGUAGACCUGCAAGCCAAUUCAAAAAUAUGUGUUUAAAAAUC------------------ .(((((((((((((....))))..)))))).((((......)))).)))..........................------------------ ( -20.70) >DroSim_CAF1 400 75 - 1 AGGCGCGAUAGUGGGCAUCCACAAUGUCGCGGGCGUAGACCUGUAAGCCAAUUCAAAAAUAUGUGUUUAAGAAUG------------------ .(((((((((((((....))))..))))))(((......)))....))).((((..((((....))))..)))).------------------ ( -21.00) >DroEre_CAF1 4376 73 - 1 AGGCGCGGUAGUGGGCAUCCACAAUGUCGCGGGCGUAGACCUGAAAGCCAUGGCAA--AUAUGUGAUUAAUGAUC------------------ .((((((..(((((....))))..)..)))(((......)))....)))((.(((.--...))).))........------------------ ( -18.10) >consensus AGGCGCGAUAGUGGGCAUCCACAAUGUCGCGGGCGUAGACCUGUAAGCCAAUUCAAAAAUAUGUGUUUAAAAAUC__________________ .(((((((((((((....))))..))))))(((......)))....)))............................................ (-17.69 = -17.75 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:11 2006