Locus 4234

Sequence ID X_DroMel_CAF1
Location 11,098,152 – 11,098,268
Length 116
Max. P 0.634180
window6957

overview

Window 7

Location 11,098,152 – 11,098,268
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.00
Mean single sequence MFE -27.34
Consensus MFE -16.30
Energy contribution -17.22
Covariance contribution 0.92
Combinations/Pair 1.26
Mean z-score -1.88
Structure conservation index 0.60
SVM decision value 0.21
SVM RNA-class probability 0.634180
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11098152 116 - 22224390
CAACUUGUUGAGCGUGACCUGCUUGGAGUCAUAAAAAACAAAACGUGUUAUUGCUGAUGGGAAAAAAUGUGAAAGCUCAAUUUACCUAUCAGUUAACUCAACAAU----GUUGUAACUAU
((((((((((((.(((((((....)).)))))....................((((((((((((....((....))....))).)))))))))...)))))))).----))))....... ( -32.60)
>DroSec_CAF1 17257 115 - 1
CAACUUGUUGAGCGUGACUUGUUUGGAGUCAUAAAAAAAAAAACGUUUUAUUGCGGGUGGGAA-AAAUGUGAAAGCUCAAUUUACCUAUCAGUUAACUCAACAAU----GUUGUAACUAU
((((((((((((.(((((((.....)))))))...........(((......)))((((((((-(...((....))....))).))))))......)))))))).----))))....... ( -29.90)
>DroSim_CAF1 11644 114 - 1
CAACUUGUUGAGCGUGACUUGUUUGGAGUCAUAAAAA-GAAAACGUUUUAUUGCGGGUGGGAA-AAAUGUGAAAGCUCAAUUUACCUAUCAGUGAACUCAACAAU----UUUGUAACUAU
....((((((((.(((((((.....))))))).....-............(..(.((((((((-(...((....))....))).)))))).)..).)))))))).----........... ( -26.70)
>DroEre_CAF1 15449 114 - 1
CAACUUGUUGAGCGUGACCGACUUGAAGUCGUAAA-----AAACGUGUUCUUUCAGGUGGCAA-AAAUGUGAAAGCUCCACUUACCCAUCAUCUAAUUUUCCUAUCAUUGUUAUAGGUUA
.(((((((..(((((((.((((.....))))....-----....(((..((((((.((.....-..)).))))))...))).......................))).))))))))))). ( -20.40)
>DroYak_CAF1 17392 118 - 1
CAACUUGUUGAGCGUGACUGCCUCGAAGUCAUAAAAA-AAAAACGUGUUAUUGCUGGUGGCAA-AAAUGUGAAAGCUCAAUUUAGCUAUCAUUUAAAUUAACUAUCAUGGAUAUAGUUGA
......(((((((((((((.......)))))).....-.....((..((.((((.....))))-.))..))...)))))))((((((((.(((((............))))))))))))) ( -27.10)
>consensus
CAACUUGUUGAGCGUGACUUGCUUGGAGUCAUAAAAA_AAAAACGUGUUAUUGCGGGUGGGAA_AAAUGUGAAAGCUCAAUUUACCUAUCAGUUAACUCAACAAU____GUUGUAACUAU
....((((((((.(((((((.....))))))).......................((((((.......((....))........))))))......))))))))................ (-16.30 = -17.22 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:51 2006