Locus 4229

Sequence ID X_DroMel_CAF1
Location 11,089,073 – 11,089,171
Length 98
Max. P 0.534093
window6948

overview

Window 8

Location 11,089,073 – 11,089,171
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 68.22
Mean single sequence MFE -34.67
Consensus MFE -14.77
Energy contribution -15.42
Covariance contribution 0.64
Combinations/Pair 1.21
Mean z-score -1.59
Structure conservation index 0.43
SVM decision value 0.00
SVM RNA-class probability 0.534093
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11089073 98 - 22224390
C-AAGAAGGGUGAA--GCAGAUG-----------GGUGCUUCCAUGGCCCGGGGGCCACGAGGGAGAUCAGGAGGUCCCAAAGGGGGAGCAGAGCUGAGUAUCCUGGCAAGG--------
.-..(.((((((..--.(((...-----------..(((((((.(((((....)))))(...((.((((....))))))...).)))))))...)))..))))))..)....-------- ( -37.00)
>DroPse_CAF1 8667 92 - 1
CCCAGAAGGGUGGUG----------------------G-CUCA---GUGCUGGGGGCUCAGGGGUGAUCAGG-GGUGCCAC-UGCGGAACAGAACAGAACAUCCCGGCAAAGCUGGGAAA
.((....))(..(((----------------------(-(.(.---...((((..(((....)))..)))).-.).)))))-..)................(((((((...))))))).. ( -32.60)
>DroSec_CAF1 8743 98 - 1
C-AAGAAGGGUGGA--GCAGAUG-----------GAGGCUUCCAUGGCCCGGGGGCCACGAGGGAGAUCAGGAGGUCCCAAAGGGGGAGCAGAGCUGAGUAUCCUGGCAAGG--------
.-..(.((((((..--.(((...-----------...((((((.(((((....)))))(...((.((((....))))))...).))))))....)))..))))))..)....-------- ( -35.40)
>DroEre_CAF1 6523 99 - 1
U-AAGAAGGGUGGUCGACAGAAG-----------GGGGUUUCCAUGGCCCAGGGGCCACGAGGGGGAUCAGGAGGUCCCAA-AGGGGAGCAGAGCUGAGUAUCCUGGCAAGG--------
.-..(.((((((.(((.(.....-----------..(((..((.(((((....)))))....))..)))....(.((((..-..)))).)...).))).))))))..)....-------- ( -36.00)
>DroYak_CAF1 8956 111 - 1
C-AAGAAGGGCGGUCGAGAGAAGGAAGGGGGGGGGGGGUUUCCAUGGCCCAGGGGCCACGAGGGAGAUCAGGAGGUCCCAAAAGGGGAGCACAGCUGAGUAUCCUGGCAAGG--------
.-.......((..((....))((((...........(((((((.(((((....)))))....)))))))....(.((((.....)))).)...........)))).))....-------- ( -34.40)
>DroPer_CAF1 8656 92 - 1
CCCAGAAGGGUGGUG----------------------G-CUCA---GUGCUGGGGGCUCAGGGGUGAUCAGG-GGUGCCAC-UGCGGAACAGAACAGAACAUCCCGGCAAAGCUGGGAAA
.((....))(..(((----------------------(-(.(.---...((((..(((....)))..)))).-.).)))))-..)................(((((((...))))))).. ( -32.60)
>consensus
C_AAGAAGGGUGGU___CAGA_G___________GGGG_UUCCAUGGCCCAGGGGCCACGAGGGAGAUCAGGAGGUCCCAA_AGGGGAGCAGAGCUGAGUAUCCUGGCAAGG________
.........((.................................(((((....)))))..((((...((((...((.((......)).))....))))...)))).))............ (-14.77 = -15.42 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:43 2006