Locus 4211

Sequence ID X_DroMel_CAF1
Location 11,039,407 – 11,039,509
Length 102
Max. P 0.804461
window6924

overview

Window 4

Location 11,039,407 – 11,039,509
Length 102
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 69.97
Mean single sequence MFE -34.90
Consensus MFE -19.45
Energy contribution -18.79
Covariance contribution -0.66
Combinations/Pair 1.25
Mean z-score -1.67
Structure conservation index 0.56
SVM decision value 0.63
SVM RNA-class probability 0.804461
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11039407 102 - 22224390
ACCCACCCAG--AAAACGCCAGC-CCGCCAUUUUUCAGCACAGUGGAGUGGGUCAGAACACUCCUGGGAAUGGCGUGUCCUUCGGGCA---------------ACAAAUUGUUGCCUCAU
.........(--((.((((((.(-((((.........)).....((((((........)))))).)))..))))))....)))(((((---------------((.....)))))))... ( -36.40)
>DroSec_CAF1 26718 105 - 1
UCCCACCCAGGGAAAAAGUCAAC-CCGCCAUUUUUCGGCACAGUGGAAUGGGUCAGGACACUCCUGGGAAUGGCGUGUCCUUCGGGCU--------------CAUUUUUUCUUGCCCCAU
((((.....))))..........-............((((.((.(((((((((((((((((.((.......)).)))))))...))))--------------))))))..)))))).... ( -35.80)
>DroYak_CAF1 21847 118 - 1
UCCCGCCCAG--AAUAUGCCAACCCCGCCAUUUGCCAGCACAGUGGGUUGGGUCACUACACUCCUGGGGAUGGCGAAUCCUGCGACCCUGCAAGUUCGCCCCUUUUUUUUGUUUCUCUAA
.....(((((--......(((((((.((....((....))..)))))))))((....))....)))))...(((((((..((((....)))).))))))).................... ( -32.50)
>consensus
UCCCACCCAG__AAAAAGCCAAC_CCGCCAUUUUUCAGCACAGUGGAAUGGGUCAGAACACUCCUGGGAAUGGCGUGUCCUUCGGGCA_______________AUUUUUUGUUGCCCCAU
.........................((((((((.((((...((((.............)))).))))))))))))........((((..........................))))... (-19.45 = -18.79 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:20 2006