Locus 4203

Sequence ID X_DroMel_CAF1
Location 11,022,545 – 11,022,663
Length 118
Max. P 0.661571
window6908

overview

Window 8

Location 11,022,545 – 11,022,663
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.08
Mean single sequence MFE -34.80
Consensus MFE -29.24
Energy contribution -29.20
Covariance contribution -0.04
Combinations/Pair 1.19
Mean z-score -1.37
Structure conservation index 0.84
SVM decision value 0.27
SVM RNA-class probability 0.661571
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11022545 118 + 22224390
CCACCCACGAAAAACUCGGACCUGCCUCGCUGCCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU--UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC
....((((((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((..--..))))))((((((.........)))))).. ( -36.00)
>DroSec_CAF1 15070 118 + 1
CCACCCACGAAAAACUCGGACCUGCCUCGCUGCCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU--UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC
....((((((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((..--..))))))((((((.........)))))).. ( -36.00)
>DroEre_CAF1 9118 118 + 1
CCACCCACGGAAAACUCGGACCUGCCUCGCUGUCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU--UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC
....((((((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((..--..))))))((((((.........)))))).. ( -32.40)
>DroYak_CAF1 10673 118 + 1
CCACCCACGAAAAACUCGGACCUGCCUCGCUGUCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU--UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC
....((((((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((..--..))))))((((((.........)))))).. ( -33.30)
>DroMoj_CAF1 12778 111 + 1
UCAUCGACGA--------GGUCUUCCUCGUU-UCGAUUGCCAAGUGAAUUUUGCCAGCCAGCGAAGGCUGAAAUUGGCUUUUGCCUUUUUUGGCGAACGUAUUUUGAAUUUUAAUGGGGA
..((((((((--------((....)))))..-)))))..(((...((((((.(((((.((((....))))...))))).((((((......))))))........))))))...)))... ( -36.30)
>consensus
CCACCCACGAAAAACUCGGACCUGCCUCGCUGUCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU__UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC
(((....(((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((......))))))((((((.........)))))).. (-29.24 = -29.20 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:04 2006