Locus 4201

Sequence ID X_DroMel_CAF1
Location 11,018,443 – 11,018,557
Length 114
Max. P 0.869842
window6906

overview

Window 6

Location 11,018,443 – 11,018,557
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 86.09
Mean single sequence MFE -25.99
Consensus MFE -23.46
Energy contribution -23.74
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.69
Structure conservation index 0.90
SVM decision value 0.87
SVM RNA-class probability 0.869842
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11018443 114 - 22224390
UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCACCACUUUCACCCGCCCGCCCGCCACUUGCCCUGCAACUAUC
......((((((....((((...(((((((((.......(((((.....))))).......))))))))).))))..........((......))........))).))).... ( -26.24)
>DroSec_CAF1 11119 98 - 1
UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUUUCACCACUUUCGCCCGC----------------CUGCAACUAUC
.((..((..(((((..((((...(((((((((.......(((((.....))))).......))))))))).))))..)))))..)).----------------.))........ ( -26.34)
>DroEre_CAF1 5060 105 - 1
UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCACCACUUUCGCC---------ACCACUUGCCCUGCAACUAUG
.........(((((..((((...(((((((((.......(((((.....))))).......))))))))).))))..)))))..---------.....((((...))))..... ( -26.04)
>DroYak_CAF1 6357 105 - 1
UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCACCACUUUCGCC---------ACCACUUGCCCUGCAACUAUA
.........(((((..((((...(((((((((.......(((((.....))))).......))))))))).))))..)))))..---------.....((((...))))..... ( -26.04)
>DroAna_CAF1 5846 102 - 1
UCUACUGUUCGGAAUCGGUGCCUGGGCAGCUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCGCCACUUUCGG------------CACUUGCCCCACAAUAACG
....((((((((.........)))))))).((((.....(((((.....))))).......((((((((............))------------))))))...))))...... ( -25.30)
>consensus
UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCACCACUUUCGCC__________CCACUUGCCCUGCAACUAUC
.........(((((..((((...(((((((((.......(((((.....))))).......))))))))).))))..)))))................................ (-23.46 = -23.74 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:02 2006