Locus 4187

Sequence ID X_DroMel_CAF1
Location 10,993,440 – 10,993,560
Length 120
Max. P 0.531741
window6878

overview

Window 8

Location 10,993,440 – 10,993,560
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.31
Mean single sequence MFE -43.30
Consensus MFE -29.62
Energy contribution -29.62
Covariance contribution -0.00
Combinations/Pair 1.44
Mean z-score -1.56
Structure conservation index 0.68
SVM decision value -0.00
SVM RNA-class probability 0.531741
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10993440 120 - 22224390
GCUUCGCCUGGAAUUGUGUGCUUUAUUCCCGACCCAGCGGCUUUUGCUGUCUGUCCACCCGGCCACCGCCCACCCGGCUUCCGGCCACCAAGUCCAGCCGGUUAACAAGCCCGAUUGCCG
((.(((.(((((.(((.((...........(((...(((((....)))))..))).....((((...(((.....)))....))))))))).)))))..((((....)))))))..)).. ( -34.80)
>DroSec_CAF1 5528 120 - 1
CCUUCGCCUGGAAUUGUGUGCUAUAUUCCCGGCCCGGCGGUUUCUGUUGCCUGUCCGGACGGGCACCGCCCACCCGGCUUCUGGCCACCAAGUCCAGCCGGUCAACAAUCCCAGUUGCCG
.....(.(((((...(((.((((.....((((...((((((.......((((((....))))))))))))...))))....)))))))....))))).)((.((((.......)))))). ( -46.11)
>DroEre_CAF1 5193 120 - 1
ACUUCGCUGGGAAUUCUGUCGUUUAUUCCCGGGCCAGCGGCAUUUGCUGCUUGUUCAACUGGGCAUCGCCCACCCGGUUUCCGGCCACCAAUACCAGUCGGCCAACAAGCCAAAAUGCCG
......((((((((..........)))))))).....((((((((...(((((((.(((((((.........)))))))...((((((........)).)))))))))))..)))))))) ( -45.30)
>DroYak_CAF1 6016 120 - 1
GCUUCGCUGGGAAUUCUGCGGCUUAUUCCCGGGCCUGCGGCUUCUGCUGCUUGUCCAACUGGGCAUCGCCCAUUCGGCUUCCGGCCACUAUAUCCAGCCGGCCAAUAAGGCAAAAUGCCG
(((..((((((.((...(.((((.....((((((..(((((....)))))..))))...(((((...)))))...)).....)))).).)).)))))).)))......(((.....))). ( -47.00)
>consensus
GCUUCGCCGGGAAUUCUGUGCUUUAUUCCCGGCCCAGCGGCUUCUGCUGCCUGUCCAACCGGGCACCGCCCACCCGGCUUCCGGCCACCAAGUCCAGCCGGCCAACAAGCCAAAAUGCCG
.....((((((...................((((.((((((....)))))).))))....((((...)))).))))))..(((((...........)))))................... (-29.62 = -29.62 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:35 2006