Locus 4169

Sequence ID X_DroMel_CAF1
Location 10,932,883 – 10,932,987
Length 104
Max. P 0.626536
window6842

overview

Window 2

Location 10,932,883 – 10,932,987
Length 104
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 94.28
Mean single sequence MFE -29.48
Consensus MFE -25.40
Energy contribution -27.02
Covariance contribution 1.63
Combinations/Pair 1.03
Mean z-score -1.61
Structure conservation index 0.86
SVM decision value 0.19
SVM RNA-class probability 0.626536
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10932883 104 + 22224390
GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGUCCAAGUAUCCCUUU--CGCUUAUGGAUUUUUUGGCCAACGGAAAGGAUGUGCCGCAGACAUCCAAACUGCACUC
....((.(((.((((((.....((((..((((((((((........--.)))..)))))))..))))...)))))))))...)).((((.........)))).... ( -30.90)
>DroSec_CAF1 15708 104 + 1
GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGUCCAAGUAUCCCUUU--CGCUUAUGGAUUUUUUGGCCAACGGAAAGGAUGUGCCGCAGACAUCCAAACUGCACUC
....((.(((.((((((.....((((..((((((((((........--.)))..)))))))..))))...)))))))))...)).((((.........)))).... ( -30.90)
>DroEre_CAF1 15235 102 + 1
GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGU-CAAGUAUCCUUUU--CGCUCAUGGAUUU-UCGGCCACCGGAAAGGAUGUGCCGCAGACAUCCAAACUGCACUC
....((.(((.((((((((.(((((((..(((-.(((......)))--.))).))))....-.)))..)))))))))))...)).((((.........)))).... ( -27.70)
>DroYak_CAF1 15429 105 + 1
GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGUUCAAGUAUCCUUUUUACGCCUAUGGAUUU-UCGGCCACCGGAAAGGUUGUGCCGCAGACAUCCAAACUGCACUC
.((((((....((((((((...(((...(((((((.(((.......))).....)))))))-..))).))))))))))))))...((((.........)))).... ( -28.40)
>consensus
GACAGCUUCCGUUUCCGGUUCCGCCAUCAAGUCCAAGUAUCCCUUU__CGCUUAUGGAUUU_UCGGCCAACGGAAAGGAUGUGCCGCAGACAUCCAAACUGCACUC
....((.(((.((((((((...((((..((((((((((...........)))..)))))))..)))).)))))))))))...)).((((.........)))).... (-25.40 = -27.02 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:02 2006