| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,927,417 – 10,927,513 |
| Length | 96 |
| Max. P | 0.975049 |
| Location | 10,927,417 – 10,927,513 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 79.09 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -9.23 |
| Energy contribution | -9.90 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.975049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10927417 96 - 22224390 CCCCUCAACAAUGCAAUUUACCUGCUAA-AAUGCUCAACUAC---AUACACAUGCUAUAUAGUCAUCACUUCAGCUGGCACAUAAGUACACACAUGUGUA ............(((.((((.....)))-).)))........---.((((((((.......((((.(......).))))((....)).....)))))))) ( -13.50) >DroSec_CAF1 10406 91 - 1 CCCCUCAACAAUGCAAUUUACUUGCAAAAAAUGCUCAAGUACAUCAUACACAUG-UAUAUAGUCAGCACUUCAGCUGGCACAUAAGUACA--------UA ...........(((((.....)))))............((((...((((....)-)))...((((((......))))))......)))).--------.. ( -19.60) >DroSim_CAF1 10210 75 - 1 CCCCUUAACAAUGCAAUUUACUUGCUAA-AAUGCUCAAG----------------UAUAUAGUCAGCACUUCAGCUGGCACAUAAGUACA--------UA ...((((...........(((((((...-...))..)))----------------))....((((((......))))))...))))....--------.. ( -14.30) >consensus CCCCUCAACAAUGCAAUUUACUUGCUAA_AAUGCUCAAGUAC___AUACACAUG_UAUAUAGUCAGCACUUCAGCUGGCACAUAAGUACA________UA ..................(((((((.......))...........................((((((......))))))....)))))............ ( -9.23 = -9.90 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:59 2006