| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,922,818 – 10,922,917 |
| Length | 99 |
| Max. P | 0.850172 |
| Location | 10,922,818 – 10,922,917 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 70.13 |
| Mean single sequence MFE | -36.38 |
| Consensus MFE | -17.22 |
| Energy contribution | -17.23 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.850172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10922818 99 - 22224390 CAAUCC-------AGCUUUCAGAUUAUCAGCACAGAUUUGCUGGGUGAAUCAACGCAGAAAGUGGGCGAGUCCUUUGAUCUGCCCGUUGAGCAGUUGGAAGUGGAU ..((((-------(.(((((((....(((((....((((.(((.((......)).))).))))(((((..((....))..))))))))))....)))))))))))) ( -36.10) >DroVir_CAF1 7524 106 - 1 CGGGGCAGGAGGUGGAUUUGAGCUGUUUAGCAGCAAUCUGGAGGGCGGCGAUGUGCAGAUGGCGGGCGUGCAGCUGGGCCUGGUCGUGGAGCAGCUGGAGCUGGAC ((.(((...((((.....(.((((((...((.((.(((((.(.(.......).).))))).))..))..)))))).))))).))).))...((((....))))... ( -34.30) >DroGri_CAF1 7240 96 - 1 CGA----------GGAUUCGAGCUGUUCAGCAGCGAUCUGAUGGCUGGCGAUGUGCAGCAGCUAAGUGUUGAGCUGGGUUUGAUUGUGCAGCAGCUGGAACUGGAU ...----------((.(((.(((((((..(((.(((((....(.(..((......(((((......))))).))..).)..))))))))))))))).))))).... ( -30.80) >DroSec_CAF1 5864 99 - 1 CAAUCC-------AGUUUCCAGAUUAUCAGCACGGAUUUGCUGGGUGAAGCAGCACAGAAAGUGGGCGAGUCUUUCGAUCUGCCCGUUGAGCAGCUGGAAGUGGAU ..((((-------(.(((((((....(((((.......(((((.......)))))........(((((..((....))..))))))))))....)))))))))))) ( -38.40) >DroEre_CAF1 5843 99 - 1 CAAACC-------AGCUUCCAGAUCAUCAGCACGGAUUUGCUGGGUGCAUCAGCGCAGAAAGUGGGCGAGUCUUUCGAUCUGCCCGUUGAGCAGCUGGAAGUGGAU ....((-------(.(((((((....((((((......)))))).(((.(((((((.....))(((((..((....))..))))))))))))).)))))))))).. ( -40.90) >DroYak_CAF1 5909 99 - 1 CAGUCC-------AGUUUCCAGUUUAUCAGCACGGAUUUGCUGGGUGAAUCGGCGCAGAAAGUGGGCGAGUCUUUCGAUCGGCCCGUGGAGCAGCUGGAAGUGGAU ..((((-------(.(((((((((..((.((.(.((((..(...)..)))).).)).......((((..(((....)))..))))...))..)))))))))))))) ( -37.80) >consensus CAAUCC_______AGAUUCCAGAUUAUCAGCACGGAUUUGCUGGGUGAAGCAGCGCAGAAAGUGGGCGAGUCUUUCGAUCUGCCCGUGGAGCAGCUGGAAGUGGAU ..............((((((((....((((((......))))))(((......)))......((((((.(((....))).))))))........)))))))).... (-17.22 = -17.23 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:56 2006