| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,899,629 – 10,899,747 |
| Length | 118 |
| Max. P | 0.636608 |
| Location | 10,899,629 – 10,899,747 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.33 |
| Mean single sequence MFE | -32.72 |
| Consensus MFE | -20.90 |
| Energy contribution | -23.28 |
| Covariance contribution | 2.38 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10899629 118 - 22224390 GUUCUUGCGUCUUGCAUGGGACAGCACAGGAAAAAAGCUUUUAAGCUACUUAAGGUUGUUGGCAGGACGAUGUUG--CCACAAGAAGCGAGUUGGGGAUAAAGACCCAGCUAAUGAGUUG .((((((((((((((....((((((..(((.....((((....)))).)))...)))))).)))))))).((...--.))))))))...(((((((........)))))))......... ( -35.00) >DroVir_CAF1 1467 97 - 1 UU-UUUGCUU----UAUGCGACA--UCAGAAAAAA--UUCAAAAGCUGAUUAGAGCUUAAUUCAAGCAGCUUUCAACUAACAAAAA-----------GUAAAUGC---GCUAAUGACUGC ..-(((((((----(.((.....--...(((....--))).(((((((....(((.....)))...))))))).......)).)))-----------)))))...---((........)) ( -13.50) >DroSec_CAF1 1296 118 - 1 GUUCUUGUGUCUUGCAUGGGACAGCUCAGGAAAAAAGCUUUUAAGCUACUUAAGGUUGUUGGCAGGACGAUGUUG--CCACAAGAAGCGAGUUGGGGAUAAAGACCCAGCUAAUGAGUUG ..(((..((.....))..)))(((((((........((((((.((((......))))..((((((.......)))--)))..)))))).(((((((........)))))))..))))))) ( -38.50) >DroSim_CAF1 1352 117 - 1 GU-CUUGCGUCUUGCAUGGGACAGCUCAGGAAAAAAGCUUUUAAGCUACUUAAGGUUGUUGGCAGGACGAUGUUG--CCACAAGAAGCAAGUUGGGGAUAAAGACCCAGCUAAUGAGUUG ((-(((((.....)))..))))((((((........((((((.((((......))))..((((((.......)))--)))..)))))).(((((((........)))))))..)))))). ( -36.00) >DroEre_CAF1 1346 118 - 1 GUUUUUGCGUCUUGCAGGGGACAGCGCAGGAAAAAAGCUUUUAAGCUGCUUAAGGUUGUUGGCAGGACGAUGUUG--CCACAAGAAGCGAGUUGGGGAUAAAGACCCAGCUAAUGAGUUG ((((((...((((((.(....)...)))))).)))))).....((((((((....((((.(((((.......)))--)))))).)))).(((((((........)))))))....)))). ( -37.60) >DroYak_CAF1 1361 118 - 1 GUUCUUGCGUCUUGCAAGGGACAGCUCAGGAAAAAAGCUUUUAAGCUACUUAAGGUUGUUGGCAGGACGCUGUUG--CCACAAGAAGCAACUUGGGGAUAAAGACCCAGCUAAUGAGUUG ......(((((((((....(((((((...((....((((....))))..))..))))))).))))))))).((((--(........)))))(((((........)))))........... ( -35.70) >consensus GUUCUUGCGUCUUGCAUGGGACAGCUCAGGAAAAAAGCUUUUAAGCUACUUAAGGUUGUUGGCAGGACGAUGUUG__CCACAAGAAGCGAGUUGGGGAUAAAGACCCAGCUAAUGAGUUG .((((((((((((((....(((((((...((....((((....))))..))..))))))).)))))))).((......))))))))...(((((((........)))))))......... (-20.90 = -23.28 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:46 2006