Locus 4147

Sequence ID X_DroMel_CAF1
Location 10,874,021 – 10,874,113
Length 92
Max. P 0.886326
window6812

overview

Window 2

Location 10,874,021 – 10,874,113
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 92.78
Mean single sequence MFE -21.80
Consensus MFE -18.78
Energy contribution -18.58
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -1.53
Structure conservation index 0.86
SVM decision value 0.94
SVM RNA-class probability 0.886326
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10874021 92 + 22224390
UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUCCAGCCGAUUAAUCAGCUAAGACUUACCCGAGAUGACCUUUUCCCUUUUGGCAUCCUG
..(((..((((((((.((((((((((..........)))))))..))))))))).........((((......))))...))..)))..... ( -21.30)
>DroSec_CAF1 28773 91 + 1
UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUCCAGCCGAUUAAUCAGCUAAGACUUACCCGAGUUGACCUUUUCCCU-UUGGCAUUCUG
..(((..((((((((.((((((((((..........)))))))..)))))))))(((((....)))))...........)-)..)))..... ( -22.20)
>DroSim_CAF1 30172 91 + 1
UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUCCAGCCGAUUAAUAAGCUAAGACUUACCCGAGUUGACCUUUUCCCU-UUGGCAGCCUG
.((((..((((((((....(((((((..........))))))).....))))))(((((....)))))...........)-)..)))).... ( -21.10)
>DroEre_CAF1 4939 91 + 1
UUUGCUGAAUUAGCUCAAUAUCGGUGUAGAUGCUCCAGCCGAUUAAUCAGCUAAGACUUUUCCAAGUUGACCUUUUCCCU-UUGGCAUCCAA
..(((..((((((((....((((((...(.....)..)))))).....))))))(((((....)))))...........)-)..)))..... ( -20.40)
>DroYak_CAF1 28355 91 + 1
UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUUCAGCCGAUUAAUCAGCUAAGACUUUUCCAAGUUGACCUUUUCCCU-UUAGCAGCCAG
.((((((((((((((.((((((((((..((....)))))))))..)))))))))(((((....)))))...........)-))))))).... ( -24.00)
>consensus
UUUGCUGAAUUAGCUCGAUAUCGGUUUAGAUGCUCCAGCCGAUUAAUCAGCUAAGACUUACCCGAGUUGACCUUUUCCCU_UUGGCAUCCUG
..((((((.((((((....((((((............)))))).....))))))(((((....))))).............))))))..... (-18.78 = -18.58 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:30 2006