| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,872,398 – 10,872,502 |
| Length | 104 |
| Max. P | 0.886213 |
| Location | 10,872,398 – 10,872,502 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.80 |
| Mean single sequence MFE | -17.35 |
| Consensus MFE | -8.94 |
| Energy contribution | -9.88 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10872398 104 - 22224390 UUCCAU--AUACACAGUUGCAGUGUUGCAAUUUUUGGCAAUACAAUCGAAUACUUCGAUUUUAUCACAGAGAAUCAAACCAUUUUCUAUGCAAUACUUCUCAAUUU- ......--.......(((((((((((((........)))))))((((((.....)))))).......(((((((......))))))).))))))............- ( -22.10) >DroSec_CAF1 27148 106 - 1 UUACACAUCUACACAAUUGAAGUGUUGCAUUUUUUGGCAAUACAAUUGAAUACUUUGAUUUUAACAAAGAGAAUCAAACCAUUUUCUAUACAAAACUGCCCAAUUU- ..............(((((..(((((((........)))))))....((((..(((((((((.......)))))))))..))))................))))).- ( -15.90) >DroSim_CAF1 28566 106 - 1 UUCCACAUCUACACAAUUGAAGUGUUACAUUUUUUGGCAAUACAAUCGAAUACUUUGAUUUUAACCAAGAGAAUCAAACCAUUUUCUAUACAAAACUGCCCAAUUU- ...(((.((.........)).)))...........((((.((.((((((.....)))))).))....(((((((......))))))).........))))......- ( -13.10) >DroYak_CAF1 26775 91 - 1 UUCGACAUCUACAUACUUGCAAUA---------UUGGUAAUAUAAUGAAAUACUUUGAUUUCAUCAAAGGGAAUCAAAGCAAUUUGU------CGAACCUCAA-AUG (((((((......((((.......---------..)))).............((((((((((.......)))))))))).....)))------))))......-... ( -18.30) >consensus UUCCACAUCUACACAAUUGAAGUGUUGCAUUUUUUGGCAAUACAAUCGAAUACUUUGAUUUUAACAAAGAGAAUCAAACCAUUUUCUAUACAAAACUGCCCAAUUU_ ..............(((((..(((((((........)))))))..........(((((((((.......)))))))))......................))))).. ( -8.94 = -9.88 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:27 2006